[Home] | [Total List]

[182196_s_at]

Description ZK1251.9 /REP_DB=WormBase Gene ID /WP=CE24718 /TR=Q21106 /GB=CAA92505.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 37      4grp_high_8_8 > 33      6grp_total > 37      4grp_total > 47      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 101
(3)
P 		84.8
(0.9)
A 		54.4
(-3)
P 		97.1
(2.5)
P 		47
B 133.2
(3)
P 		97.3
(-1.1)
P 		103.5
(-0.4)
P 		80.1
(-3)
P 		53
C 124.7
(3)
P 		94.5
(-3)
A 		115.2
(1.1)
P 		100.5
(-1.8)
P 		30
avr 119.6
(3) 		92.2
(-2.7) 		91
(-3) 		92.6
(-2.7) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 107.3
(1.8)
P 		87.7
(0.2)
P 		61.2
(-2)
A 		73.7
(-1)
P 		49.7
(-3)
P 		121.4
(3)
P 		72
B 121.4
(3)
P 		106.7
(1.3)
P 		87.1
(-1.1)
P 		70.8
(-3)
P 		77.4
(-2.2)
P 		114.8
(2.2)
P 		51
C 153.6
(3)
P 		108.2
(0.6)
P 		103.8
(0.3)
P 		41.6
(-3)
A 		86.4
(-0.6)
P 		100.4
(0.2)
P 		112
avr 127.4
(3) 		100.9
(0.6) 		84
(-1) 		62
(-3) 		71.2
(-2.2) 		112.2
(1.6) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 36.8
(3)
P 		18.4
(-1.9)
A 		14.2
(-3)
P 		14.2
(-3)
P 		23
B 42.5
(3)
P 		24
(-1.4)
P 		24
(-1.4)
P 		17.1
(-3)
P 		25
C 41.3
(3)
P 		27.2
(-0.5)
A 		40.1
(2.7)
P 		16.9
(-3)
P 		24
avr 40.2
(3) 		23.2
(-1.2) 		26.1
(-0.5) 		16.1
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 19.8
(-0.8)
P 		31.2
(3)
P 		13.3
(-3)
A 		18.7
(-1.2)
P 		15
(-2.4)
P 		29.6
(2.5)
P 		18
B 42.2
(2.9)
P 		35.5
(1.2)
P 		21.2
(-2.4)
P 		18.7
(-3)
P 		31.4
(0.2)
P 		42.8
(3)
P 		24
C 56.9
(3)
P 		33
(0)
P 		26.4
(-0.8)
P 		8.4
(-3)
A 		28
(-0.6)
P 		33.6
(0.1)
P 		49
avr 39.6
(3) 		33.2
(1.4) 		20.3
(-1.8) 		15.3
(-3) 		24.8
(-0.7) 		35.3
(1.9) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182196_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10225
Sequence Type Exemplar sequence
Representative Public ID ZK1251.9 NCBI
Target Description ZK1251.9 /REP_DB=WormBase Gene ID /WP=CE24718 /TR=Q21106 /GB=CAA92505.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069324 NCBI Caenorhabditis elegans ZK1251.9 (ZK1251.9) mRNA, complete cds. 11/11 None
ZK1251.9 ENSEMBL cdna:known chromosome:CEL140:IV:9696964:9706695:-1 gene:ZK1251.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9697238-9704447(-) 92.96 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1251.9
Entrez Gene 177804 Entrez gene
SwissProt Q21106 EMBL-EBI
WormBase CE33014 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253560_AT transducin family protein / WD-40 repeat family protein at
DROSOPHILA_2:1635568_AT dm
DROSGENOME1:141651_AT dm
CHICKEN:GGA.18950.1.S1_S_AT Vpr-binding protein gga
CHICKEN:GGAAFFX.1598.1.S1_AT Vpr-binding protein gga
CHICKEN:GGAAFFX.25474.1.S1_AT Vpr-binding protein gga
MOE430A:1434609_AT RIKEN cDNA B930007L02 gene mm
MOUSE430A_2:1434609_AT RIKEN cDNA B930007L02 gene mm
MOUSE430_2:1434609_AT RIKEN cDNA B930007L02 gene mm
MU11KSUBA:AA117417_S_AT RIKEN cDNA B930007L02 gene mm
MG-U74AV2:92243_AT RIKEN cDNA B930007L02 gene mm
MG-U74BV2:106208_AT RIKEN cDNA B930007L02 gene mm
MOE430A:1455764_AT RIKEN cDNA B930007L02 gene mm
MOUSE430A_2:1455764_AT RIKEN cDNA B930007L02 gene mm
MOUSE430_2:1455764_AT RIKEN cDNA B930007L02 gene mm
MOE430A:1454798_AT RIKEN cDNA B930007L02 gene mm
MOUSE430A_2:1454798_AT RIKEN cDNA B930007L02 gene mm
MOUSE430_2:1454798_AT RIKEN cDNA B930007L02 gene mm
MOE430B:1459455_AT RIKEN cDNA B930007L02 gene, mRNA (cDNA clone MGC:86055 IMAGE:6853519) mm
MOUSE430_2:1459455_AT RIKEN cDNA B930007L02 gene, mRNA (cDNA clone MGC:86055 IMAGE:6853519) mm
MU19KSUBB:TC33256_R_AT RIKEN cDNA B930007L02 gene, mRNA (cDNA clone MGC:86055 IMAGE:6853519) mm
MU19KSUBB:TC34118_AT RIKEN cDNA B930007L02 gene, mRNA (cDNA clone MGC:86055 IMAGE:6853519) mm
Protein Similarities
Method ID Description E-Value
blast CAA92505 Hypothetical protein ZK1251.9 [Caenorhabditis elegans] emb|CAA92475.3| Hypothetical protein ZK1251.9 [Caenorhabditis elegans] ref|NP_501725.2| ZK1251.9 [Caenorhabditis elegans] 0.0
blast CAE74826 Hypothetical protein CBG22664 [Caenorhabditis briggsae] 0.0
blast XP_356186 PREDICTED: Vpr-binding protein [Mus musculus] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182196_S_AT
gggagcggctattgatgatttggtagatgcagttgatgaagaagttgatgaagatgaatt
gggaactgatggtgatgatgatgatagtggaagttggagaacaactaattccattgactc
agaagacattaatctagacgatctcgacgaagaagaagctcgtgtcgtggaaaatgaggg
caacaacgaacgcccagcgcgtccagtagatccaatagaagcagcagctgctgctcgtcg
agccatcctcggccgcggtctccgagatcttcgaatgggaattagaggaggtaatcgtcg
tcgaaatggaggtggtttagagcaagctgaaatgttgaatgcccgagctgaagagcaacg
agtttcgttcatggaggctcttgttagaggagctgaggctgaacggagagaggaagaagg
tggcgatgacggagaaagcagtagcagcagtagtagtgatactgatgaatatcaatccga
agaggaggagatcaacagtgtcagtacaaccgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAGCGGCTATTGATGATTTGGTA 513 495 3084 Antisense
GAACAACTAATTCCATTGACTCAGA 164 353 3182 Antisense
GACATTAATCTAGACGATCTCGACG 28 371 3208 Antisense
TGAGGGCAACAACGAACGCCCAGCG 278 567 3258 Antisense
CAGCGCGTCCAGTAGATCCAATAGA 366 203 3278 Antisense
TTAGAGGAGGTAATCGTCGTCGAAA 709 681 3365 Antisense
ATGGAGGTGGTTTAGAGCAAGCTGA 372 51 3389 Antisense
GAATGCCCGAGCTGAAGAGCAACGA 75 331 3420 Antisense
ACGAGTTTCGTTCATGGAGGCTCTT 600 93 3441 Antisense
GGAGCTGAGGCTGAACGGAGAGAGG 625 521 3472 Antisense
ATCAACAGTGTCAGTACAACCGCCC 91 27 3574 Antisense
Sequence Source Affymetrix Proprietary Database