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[182195_at]

Description C08E3.9 /REP_DB=WormBase Gene ID /WP=CE08012 /TR=O17200 /GB=AAB70968.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 79.4
(-0.6)
A 		48.1
(-3)
A 		94.6
(0.6)
A 		124.9
(3)
P 		77
B 56.8
(-2.7)
A 		54.3
(-3)
A 		99
(3)
A 		67.7
(-1.2)
A 		45
C 20.9
(-3)
A 		85
(0)
A 		65.9
(-0.9)
A 		147.7
(3)
P 		127
avr 52.4
(-3) 		62.5
(-2) 		86.5
(0.4) 		113.4
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 63.7
(-3)
A 		66.4
(-2.7)
A 		89.3
(-0.5)
P 		125
(3)
A 		97.3
(0.3)
A 		69.4
(-2.4)
A 		61
B 70.1
(-2)
A 		80.6
(-0.3)
M 		102.2
(3)
A 		63.3
(-3)
A 		85.3
(0.4)
M 		70.7
(-1.9)
A 		39
C 33.6
(-3)
A 		60.3
(-0.7)
P 		41.6
(-2.3)
A 		103.3
(3)
A 		61.6
(-0.6)
A 		57.7
(-0.9)
P 		70
avr 55.8
(-3) 		69.1
(-1.1) 		77.7
(0.2) 		97.2
(3) 		81.4
(0.7) 		65.9
(-1.5) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 28.9
(3)
A 		10.4
(-3)
A 		24.7
(1.6)
A 		18.3
(-0.4)
P 		19
B 18.1
(-0)
A 		13.4
(-3)
A 		22.9
(3)
A 		14.4
(-2.4)
A 		10
C 6.9
(-3)
A 		24.4
(2.8)
A 		23
(2.4)
A 		24.9
(3)
P 		18
avr 18
(-1.5) 		16.1
(-3) 		23.5
(3) 		19.2
(-0.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 11.7
(-3)
A 		23.6
(0.6)
A 		19.4
(-0.7)
P 		31.7
(3)
A 		29.4
(2.3)
A 		16.9
(-1.4)
A 		20
B 24.4
(-0.5)
A 		26.8
(0.4)
M 		24.8
(-0.3)
A 		16.8
(-3)
A 		34.7
(3)
M 		26.4
(0.2)
A 		18
C 12.4
(-1.9)
A 		18.4
(1.6)
P 		10.6
(-3)
A 		20.8
(3)
A 		19.9
(2.5)
A 		19.3
(2.1)
P 		10
avr 16.2
(-3) 		22.9
(0.4) 		18.3
(-1.9) 		23.1
(0.5) 		28
(3) 		20.9
(-0.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5630
Sequence Type Exemplar sequence
Representative Public ID C08E3.9 NCBI
Target Description C08E3.9 /REP_DB=WormBase Gene ID /WP=CE08012 /TR=O17200 /GB=AAB70968.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061613(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061613 NCBI Caenorhabditis elegans C08E3.9 (C08E3.9) mRNA, complete cds. 11/11 None
SNAP00000042051 ENSEMBL cdna:SNAP chromosome:CEL140:II:1616943:1619008:-1 11/11 None
GENEFINDER00000042063 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1616943:1619008:-1 11/11 None
C08E3.9 ENSEMBL cdna:known chromosome:CEL140:II:1616887:1619008:-1 gene:C08E3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1616885-1619007(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08E3.9
Entrez Gene 182401 Entrez gene
SwissProt O17200 EMBL-EBI
WormBase CE08012 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494014 C08E3.9 [Caenorhabditis elegans] 0.0
blast AAB70968 Hypothetical protein C08E3.9 [Caenorhabditis elegans] 0.0
blast AAB70969 Hypothetical protein C08E3.10 [Caenorhabditis elegans] ref|NP_494015.2| C08E3.10 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.3E-40
Sequence
Target Sequence 
>C. ELEGANS:182195_AT
atttgccataatcgctgtagctacaaaagaattccgtgagaagtgcatgaagcgcgtcga
agaagctctgaagactgcaaaaagcttgacgtcgagaacagtggaaacaactggtggtta
cctactagaactcgcacaattgatggctatcttccctgctaaaaatgtggaagaaattag
attcactggagatggaacgataggaagtgaacagctggtcagcctggaacaatggaagaa
tgctagaaaatttgatggaatgagggatttgaatgttccgattgagcactttttgcattt
tgagactttcatagtttatttatcggtattcacagaagatgatgcagtgaagcttcgtga
tatgatcgatagatcagcccacttctgttatgctagacttcatttcaaaagtatgaacat
cagaacactgatgggagtcttcgatgtctacaatactgagcacaatatcgtttaccaaac
tccagaccaaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGCCATAATCGCTGTAGCTACA 494 17 600 Antisense
GAGAAGTGCATGAAGCGCGTCGAAG 302 391 637 Antisense
GGTGGTTACCTACTAGAACTCGCAC 375 499 712 Antisense
GAACTCGCACAATTGATGGCTATCT 462 349 727 Antisense
GCTATCTTCCCTGCTAAAAATGTGG 177 297 745 Antisense
GTGAACAGCTGGTCAGCCTGGAACA 538 481 806 Antisense
GATCGATAGATCAGCCCACTTCTGT 565 417 963 Antisense
GCCCACTTCTGTTATGCTAGACTTC 34 287 976 Antisense
GATGGGAGTCTTCGATGTCTACAAT 141 409 1029 Antisense
TACTGAGCACAATATCGTTTACCAA 500 647 1053 Antisense
GTTTACCAAACTCCAGACCAAAGAT 314 449 1069 Antisense
Sequence Source Affymetrix Proprietary Database