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[182194_at]

Description C31A11.9 /REP_DB=WormBase Gene ID /WP=CE15659 /TR=O45284 /GB=CAB05691.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 18      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 25.4
(-0.8)
A 		30.3
(-0.2)
A 		7.7
(-3)
A 		56
(3)
A 		48
B 13.3
(-2.4)
A 		51.5
(3)
A 		8.8
(-3)
A 		42.8
(1.8)
A 		43
C 7.4
(-3)
A 		25.9
(-2.1)
A 		42.8
(-1.3)
A 		132.8
(3)
P 		125
avr 15.4
(-3) 		35.9
(-1) 		19.8
(-2.6) 		77.2
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 7
(-3)
A 		7.4
(-3)
A 		89.5
(3)
A 		14.9
(-2.4)
A 		37.8
(-0.8)
A 		10.5
(-2.7)
A 		83
B 12.7
(-1.8)
A 		23.8
(-0.1)
A 		37.3
(1.9)
A 		44.9
(3)
A 		5.2
(-2.9)
A 		4.5
(-3)
A 		40
C 14.3
(-2)
A 		51.7
(3)
A 		15.3
(-1.9)
A 		35.8
(0.9)
A 		7.6
(-2.9)
A 		7.2
(-3)
A 		45
avr 11.3
(-2.4) 		27.6
(0) 		47.4
(3) 		31.9
(0.7) 		16.9
(-1.6) 		7.4
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 9.2
(3)
A 		6.6
(0.8)
A 		2
(-3)
A 		8.2
(2.2)
A 		7
B 4.2
(-1.8)
A 		12.7
(3)
A 		2
(-3)
A 		9.1
(1)
A 		11
C 2.4
(-3)
A 		7.5
(-1.5)
A 		14.9
(0.8)
A 		22.4
(3)
P 		20
avr 5.3
(-3) 		8.9
(-0.3) 		6.3
(-2.2) 		13.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.3
(-3)
A 		2.6
(-2.6)
A 		19.5
(3)
A 		3.8
(-2.2)
A 		11.4
(0.3)
A 		2.6
(-2.6)
A 		18
B 4.4
(-1.4)
A 		7.9
(0.6)
A 		9.1
(1.4)
A 		11.9
(3)
A 		2.1
(-2.8)
A 		1.7
(-3)
A 		10
C 5.3
(-1.7)
A 		15.8
(3)
A 		3.9
(-2.3)
A 		7.2
(-0.9)
A 		2.5
(-3)
A 		2.4
(-3)
A 		13
avr 3.7
(-2) 		8.8
(1.6) 		10.8
(3) 		7.6
(0.8) 		5.3
(-0.8) 		2.2
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182194_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14093
Sequence Type Exemplar sequence
Representative Public ID C31A11.9 NCBI
Target Description C31A11.9 /REP_DB=WormBase Gene ID /WP=CE15659 /TR=O45284 /GB=CAB05691.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074721(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074721 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-214) (str-214) mRNA, complete cds. 11/11 None
C31A11.9 ENSEMBL cdna:known chromosome:CEL140:V:16317887:16319809:1 gene:C31A11.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000585 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16317886-16319809(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-214
Ensembl C31A11.9
Entrez Gene 183075 Entrez gene
SwissProt O45284 EMBL-EBI
WormBase CE15659 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05691 Hypothetical protein C31A11.9 [Caenorhabditis elegans] ref|NP_507122.1| Seven TM Receptor family member (str-214) [Caenorhabditis elegans] 0.0
blast T31854 hypothetical protein C02E7.11 - Caenorhabditis elegans 1.0E-129
blast AAC24172 Seven tm receptor protein 211 [Caenorhabditis elegans] ref|NP_504329.1| Seven TM Receptor family member (str-211) [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.2E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507122.1 7 11-30,43-65,91-113,134-156,204-226,250-272,287-309
C31A11.9 7 11-30,43-65,91-113,134-156,204-226,250-272,287-309
Sequence
Target Sequence 
>C. ELEGANS:182194_AT
attgatatcactgctggatgccttccacgcaaaagttcaaatgattatttgagagatagt
atgtcggaaagacttggcttgaacgtcagtgaaattgtatattttgctccatatttttat
gagttcaatgagaatggtgaaaaagaaattttttggccagctctggctgcactctttttg
aactcatctactattattatatctcttgtgttttcaatctactatggagtaaaatgttgg
cgaagaatgcacgcaattttttccagttcctcttcccagtttcaaaatattcatagccag
ctattctacgctttggttgctcaaacaatgattccagtattcttaatgcacataccagtt
ctcacaatgttcattttttcattaatggagattgatgctggatctttcagcagtatcgta
tcaatgacaattgcactatttccaactttagatccactgccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGATATCACTGCTGGATGCCTTC 265 5 460 Antisense
GATGCCTTCCACGCAAAAGTTCAAA 669 405 476 Antisense
GAAAGACTTGGCTTGAACGTCAGTG 559 359 526 Antisense
TTTTTTGGCCAGCTCTGGCTGCACT 392 673 608 Antisense
ATATCTCTTGTGTTTTCAATCTACT 177 21 658 Antisense
TTCCTCTTCCCAGTTTCAAAATATT 139 699 726 Antisense
GCTATTCTACGCTTTGGTTGCTCAA 541 303 759 Antisense
TAATGCACATACCAGTTCTCACAAT 236 637 803 Antisense
GGATCTTTCAGCAGTATCGTATCAA 618 511 859 Antisense
GACAATTGCACTATTTCCAACTTTA 673 363 885 Antisense
TTCCAACTTTAGATCCACTGCCAAC 585 699 899 Antisense
Sequence Source Affymetrix Proprietary Database