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[182193_at]

Description ZK484.5 /REP_DB=WormBase Gene ID /WP=CE15345 /TR=O44898 /GB=AAK39387.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 15.5
(-2.8)
A 		12.2
(-3)
A 		105.4
(2.4)
A 		115.4
(3)
A 		103
B 6.2
(-3)
A 		13.2
(-2.3)
A 		67.2
(3)
A 		55.9
(1.9)
A 		61
C 13.5
(-2.6)
A 		64.3
(1.6)
A 		9.1
(-3)
A 		80.7
(3)
A 		72
avr 11.7
(-3) 		29.9
(-1.5) 		60.6
(1.1) 		84
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 955
1 2 3 4 5 6 range
A 60.6
(-2.7)
A 		24
(-2.9)
A 		8.9
(-3)
A 		126.6
(-2.3)
A 		745.9
(1.7)
P 		959.7
(3)
P 		951
B 8.2
(-3)
A 		4.8
(-3)
A 		10.4
(-3)
A 		140.6
(-2.1)
A 		869.4
(3)
P 		643.4
(1.4)
P 		865
C 10.4
(-3)
A 		39.1
(-2.8)
A 		19.9
(-2.9)
A 		141.6
(-2)
P 		753.6
(2.5)
P 		819.6
(3)
P 		809
avr 26.4
(-2.9) 		22.6
(-2.9) 		13.1
(-3) 		136.3
(-2.1) 		789.6
(2.9) 		807.6
(3) 		795
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 5.7
(-2.3)
A 		2.7
(-3)
A 		27.5
(3)
A 		16.9
(0.4)
A 		25
B 2
(-3)
A 		3.3
(-2.4)
A 		15.6
(3)
A 		11.9
(1.4)
A 		14
C 4.5
(-2.5)
A 		18.5
(3)
A 		3.2
(-3)
A 		13.6
(1.1)
A 		15
avr 4.1
(-3) 		8.2
(-0.8) 		15.4
(3) 		14.1
(2.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 11.2
(-2.8)
A 		8.6
(-2.8)
A 		1.9
(-3)
A 		32.1
(-2.2)
A 		225.1
(2.8)
P 		233.7
(3)
P 		232
B 2.9
(-3)
A 		1.6
(-3)
A 		2.5
(-3)
A 		37.2
(-2.4)
A 		353.2
(3)
P 		239.9
(1.1)
P 		352
C 3.9
(-3)
A 		11.9
(-2.8)
A 		5.1
(-3)
A 		28.5
(-2.5)
P 		243.9
(2.3)
P 		274.4
(3)
P 		271
avr 6
(-2.9) 		7.4
(-2.9) 		3.2
(-3) 		32.6
(-2.3) 		274.1
(3) 		249.3
(2.5) 		271
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182193_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1037
Sequence Type Exemplar sequence
Representative Public ID ZK484.5 NCBI
Target Description ZK484.5 /REP_DB=WormBase Gene ID /WP=CE15345 /TR=O44898 /GB=AAK39387.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059354(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059354 NCBI Caenorhabditis elegans ZK484.5 (ZK484.5) mRNA, complete cds. 11/11 None
SNAP00000003125 ENSEMBL cdna:SNAP chromosome:CEL140:I:6095565:6095864:-1 11/11 None
GENEFINDER00000003136 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6095565:6095864:-1 11/11 None
ZK484.5 ENSEMBL cdna:known chromosome:CEL140:I:6095565:6095864:-1 gene:ZK484.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6095564-6095864(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK484.5
Entrez Gene 172289 Entrez gene
SwissProt O44898 EMBL-EBI
WormBase CE15345 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39387 Hypothetical protein ZK484.5 [Caenorhabditis elegans] ref|NP_491755.1| ZK484.5 [Caenorhabditis elegans] 2.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491755.1 2 7-24,81-98
ZK484.5 2 7-24,81-98
SNAP00000003125 2 7-24,81-98
GENEFINDER00000003136 2 7-24,81-98
Sequence
Target Sequence 
>C. ELEGANS:182193_AT
tgccgtttttgtccaccatggatttgctgctgctgaagaagagaagaatacagcttcagt
cgtcagccctgctccggactctgaagcagcccaacctgctggaaacggaaccgaaacacc
aaaagatgaggtgaaggatgaggcaccaaaagaaggtagtgaaactgaagcttcaccaga
agccaagacaaaaggatctatggtattccatgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGTTTTTGTCCACCATGGATTT 491 585 57 Antisense
TGTCCACCATGGATTTGCTGCTGCT 313 557 66 Antisense
AGAATACAGCTTCAGTCGTCAGCCC 364 75 101 Antisense
TCTGAAGCAGCCCAACCTGCTGGAA 240 609 136 Antisense
GCAGCCCAACCTGCTGGAAACGGAA 522 313 142 Antisense
TGCTGGAAACGGAACCGAAACACCA 320 577 153 Antisense
GGAACCGAAACACCAAAAGATGAGG 499 527 163 Antisense
GGATGAGGCACCAAAAGAAGGTAGT 628 505 192 Antisense
GAAGCTTCACCAGAAGCCAAGACAA 195 343 223 Antisense
AAGCCAAGACAAAAGGATCTATGGT 389 147 236 Antisense
AAAGGATCTATGGTATTCCATGCTC 288 121 247 Antisense
Sequence Source Affymetrix Proprietary Database