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[182192_s_at]

Description C24A1.3 /REP_DB=WormBase Gene ID /WP=CE27723 /TR=O17055 /GB=AAB70312.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 81      6grp_total > 05      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 480.1
(3)
P 		361.7
(-1)
P 		373.2
(-0.6)
P 		301.6
(-3)
P 		179
B 466.3
(3)
P 		364.4
(-0.8)
P 		417.6
(1.2)
P 		306.2
(-3)
P 		160
C 383.8
(2.2)
P 		356.6
(1.1)
P 		402
(3)
P 		259.3
(-3)
P 		143
avr 443.4
(3) 		360.9
(-0.2) 		397.6
(1.2) 		289
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 343.6
(2)
P 		365.5
(3)
P 		230.7
(-3)
P 		312.5
(0.6)
P 		245.8
(-2.3)
P 		240.4
(-2.6)
P 		135
B 267.1
(2.7)
P 		272.4
(3)
P 		167.8
(-3)
P 		264.2
(2.5)
P 		201.8
(-1)
P 		198.2
(-1.3)
P 		105
C 341.5
(2.5)
P 		259.1
(0.5)
P 		360.3
(3)
P 		120.1
(-3)
P 		293.9
(1.3)
P 		168.1
(-1.8)
P 		240
avr 317.4
(3) 		299
(2) 		252.9
(-0.4) 		232.3
(-1.4) 		247.2
(-0.7) 		202.2
(-3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 174.8
(3)
P 		78.5
(-1.4)
P 		97.6
(-0.5)
P 		44.1
(-3)
P 		131
B 148.7
(3)
P 		90
(-1.2)
P 		96.8
(-0.7)
P 		65.3
(-3)
P 		83
C 127
(2.2)
P 		102.5
(0.7)
P 		140.1
(3)
P 		43.7
(-3)
P 		96
avr 150.2
(3) 		90.3
(-0.6) 		111.5
(0.7) 		51
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 63.3
(-2)
P 		130
(3)
P 		50.2
(-3)
P 		79.3
(-0.8)
P 		74.2
(-1.2)
P 		58.5
(-2.4)
P 		80
B 92.9
(3)
P 		90.7
(2.7)
P 		40.8
(-3)
P 		70
(0.4)
P 		82
(1.7)
P 		73.9
(0.8)
P 		52
C 126.6
(3)
P 		79.1
(0.2)
P 		91.7
(1)
P 		24.1
(-3)
P 		95.1
(1.2)
P 		56.3
(-1.1)
P 		103
avr 94.3
(2.2) 		99.9
(3) 		60.9
(-2.6) 		57.8
(-3) 		83.8
(0.7) 		62.9
(-2.3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182192_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8246
Sequence Type Exemplar sequence
Representative Public ID C24A1.3 NCBI
Target Description C24A1.3 /REP_DB=WormBase Gene ID /WP=CE27723 /TR=O17055 /GB=AAB70312.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026011 NCBI Caenorhabditis elegans C24A1.3a (C24A1.3) mRNA, complete cds. 11/11 None
SNAP00000038335 ENSEMBL cdna:SNAP chromosome:CEL140:III:692550:696150:-1 11/11 None
GENEFINDER00000038343 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:692550:696452:-1 11/11 None
C24A1.3a ENSEMBL cdna:known chromosome:CEL140:III:692532:696314:-1 gene:C24A1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026012 7/11 Cross Hyb Matching Probes None
C24A1.3b 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175225 2 1 NM_001026011 182192_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:692549-696150(-) 100.0 100.0
Public Domain and Genome References
Ensembl C24A1.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70312 Hypothetical protein C24A1.3a [Caenorhabditis elegans] ref|NP_001021182.1| C24A1.3a [Caenorhabditis elegans] 0.0
blast CAE69207 Hypothetical protein CBG15247 [Caenorhabditis briggsae] 0.0
blast AAT92081 Hypothetical protein C24A1.3b [Caenorhabditis elegans] ref|NP_001021183.1| C24A1.3b [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
hanks 2.1.11 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; CMKI 2.0E-17
hanks 2.1.11 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; CMKI 5.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-6
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-5
Pfam IPR002110 EMBL-EBI Ankyrin 7.3E-5
Pfam IPR002110 EMBL-EBI Ankyrin 3.2E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.0038
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.0026
Pfam IPR002110 EMBL-EBI Ankyrin 1.0E-9
Pfam IPR002110 EMBL-EBI Ankyrin 0.34
Pfam IPR000719 EMBL-EBI Protein kinase 8.8E-57
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-6
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-5
Pfam IPR002110 EMBL-EBI Ankyrin 7.3E-5
Pfam IPR002110 EMBL-EBI Ankyrin 3.2E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.0038
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.0026
Pfam IPR002110 EMBL-EBI Ankyrin 1.0E-9
Pfam IPR002110 EMBL-EBI Ankyrin 0.34
Pfam IPR000719 EMBL-EBI Protein kinase 2.1E-58
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-6
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-5
Pfam IPR002110 EMBL-EBI Ankyrin 7.3E-5
Pfam IPR002110 EMBL-EBI Ankyrin 3.2E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.0038
Pfam IPR002110 EMBL-EBI Ankyrin 1.9E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.0026
Pfam IPR002110 EMBL-EBI Ankyrin 1.0E-9
Pfam IPR002110 EMBL-EBI Ankyrin 0.34
Pfam IPR000719 EMBL-EBI Protein kinase 2.1E-58
Sequence
Target Sequence 
>C. ELEGANS:182192_S_AT
caacccgggaacctgcgatggatggcaccggaggtgttctctcaatctggaaaatatgat
agaaaagtcgacgtcttcagctttgctctagtcatttgggagattcacaccgcggagctc
ccattctcacacctaaaacctgcggcggcggcggctgagatgacatataagcgggggaga
ccaacactaccaaatcaaccaactgcacagtttccagcacacatcttaagcttaattcct
caagcctggcatcccgaatcaagctcccgaccagattttgtagaaattgttgcgttactc
gagccacacgttgaatccacgcacacagatataagtgctccttctacagtatcccagttg
acatctcaatgggagcagctaagcgtggcacctccccccgcgtcaaagttcccgccaatt
ctctcggcgttacatgggatcgctgctacggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCCGGGAACCTGCGATGGATGG 687 121 2029 Antisense
GGATGGCACCGGAGGTGTTCTCTCA 440 515 2048 Antisense
GAAAAGTCGACGTCTTCAGCTTTGC 391 353 2090 Antisense
TCAGCTTTGCTCTAGTCATTTGGGA 430 625 2105 Antisense
CATTCTCACACCTAAAACCTGCGGC 19 217 2150 Antisense
CACAGTTTCCAGCACACATCTTAAG 554 195 2234 Antisense
TCAAGCTCCCGACCAGATTTTGTAG 32 633 2287 Antisense
GAAATTGTTGCGTTACTCGAGCCAC 13 365 2311 Antisense
TATAAGTGCTCCTTCTACAGTATCC 19 661 2358 Antisense
TACAGTATCCCAGTTGACATCTCAA 103 645 2373 Antisense
GTTACATGGGATCGCTGCTACGGGA 49 445 2457 Antisense
Sequence Source Affymetrix Proprietary Database