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[182191_at]

Description Y47H9B.1 /REP_DB=WormBase Gene ID /WP=CE19181 /TR=Q9XWZ7 /GB=CAA21048.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 63.6
(2)
A 		16.6
(-3)
A 		73.4
(3)
A 		70.3
(2.7)
A 		57
B 40.1
(1.4)
A 		44.6
(3)
A 		34.6
(-0.5)
A 		27.3
(-3)
A 		17
C 53.3
(-0.9)
A 		4.5
(-3)
A 		3.6
(-3)
A 		145
(3)
A 		141
avr 52.3
(0.1) 		21.9
(-3) 		37.2
(-1.4) 		80.9
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 81.2
(2.2)
A 		45.7
(-1.2)
A 		26.8
(-3)
A 		70
(1.1)
A 		89.8
(3)
A 		69.3
(1)
M 		63
B 41.6
(-1.3)
A 		30.6
(-3)
A 		36.6
(-2.1)
A 		68.6
(3)
A 		43.7
(-0.9)
A 		41.3
(-1.3)
A 		38
C 44.1
(-1.1)
A 		42
(-1.3)
A 		68.8
(0.9)
A 		94.6
(3)
A 		44.4
(-1.1)
A 		21.1
(-3)
M 		74
avr 55.6
(-0.5) 		39.4
(-3) 		44.1
(-2.3) 		77.7
(3) 		59.3
(0.1) 		43.9
(-2.3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 23.1
(3)
A 		3.6
(-3)
A 		19.2
(1.8)
A 		10.3
(-0.9)
A 		20
B 12.8
(3)
A 		11
(1.5)
A 		8
(-1.1)
A 		5.8
(-3)
A 		7
C 17.6
(1.2)
A 		1.3
(-3)
A 		1.3
(-3)
A 		24.4
(3)
A 		23
avr 17.8
(3) 		5.3
(-3) 		9.5
(-1) 		13.5
(0.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 15
(-0.4)
A 		16.3
(-0)
A 		5.8
(-3)
A 		17.7
(0.4)
A 		27.1
(3)
A 		16.9
(0.1)
M 		21
B 14.5
(0.6)
A 		10.2
(-2.2)
A 		8.9
(-3)
A 		18.2
(3)
A 		17.8
(2.7)
A 		15.4
(1.2)
A 		9
C 16.3
(1.7)
A 		12.8
(-0.1)
A 		17.5
(2.3)
A 		19
(3)
A 		14.4
(0.7)
A 		7
(-3)
M 		12
avr 15.3
(0) 		13.1
(-1.4) 		10.7
(-3) 		18.3
(2) 		19.8
(3) 		13.1
(-1.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1053
Sequence Type Exemplar sequence
Representative Public ID Y47H9B.1 NCBI
Target Description Y47H9B.1 /REP_DB=WormBase Gene ID /WP=CE19181 /TR=Q9XWZ7 /GB=CAA21048.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060592
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000043417 ENSEMBL cdna:SNAP chromosome:CEL140:I:11755351:11755536:1 None
NM_060592 NCBI Caenorhabditis elegans Y47H9B.2 (Y47H9B.2) mRNA, complete cds. None
GENEFINDER00000043420 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11755363:11755536:1 None
Y47H9B.2 ENSEMBL cdna:known chromosome:CEL140:I:11752294:11755536:1 gene:Y47H9B.2 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11754821-11755467(+) 73.15 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47H9B.2
Entrez Gene 173057 Entrez gene
SwissProt Q9XWZ8 EMBL-EBI
WormBase CE34123 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21047 Hypothetical protein Y47H9B.2 [Caenorhabditis elegans] ref|NP_492993.2| Y47H9B.2 [Caenorhabditis elegans] 1.0E-152
blast CAE67998 Hypothetical protein CBG13608 [Caenorhabditis briggsae] 1.0E-19
blast CAB04288 Hypothetical protein F35E2.9 [Caenorhabditis elegans] ref|NP_492987.2| F35E2.9 [Caenorhabditis elegans] 2.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 3.6E-88
Sequence
Target Sequence 
>C. ELEGANS:182191_AT
gcctaagcctgcccaagggtatttgtttcgtgcgagctctcctgtacgtctttcgcttgc
tttgtgtttttctgcctattttatgcctgccaacttcatgcctgccaccgcctacttgcc
cacgtacctaccttgcgcctgtcttgtacattcttgcctgcgaggctgcctattttatgc
ctgcctacctgatgcctgtttcacgcatgcttgcctacttaccttccttccttttttgcg
catatttctatattcttgcctatttggttgtctcagaagcctgcctattttatgcccgtt
ttccgccagccagcctagcaactattggaagccggaaatacccgtggtactacaaaatga
gctcagcaatgtatccagcgttgtgcgaattggctggaatttgttctgaagcttccacga
ctactaccgttcaaccatcaacagcgtccactgcagagccaacggattcaccagagcctc
caagtacatctccaagcggcgctgaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTAAGCCTGCCCAAGGGTATTTG 16 281 26 Antisense
TTTTCTGCCTATTTTATGCCTGCCA 343 677 93 Antisense
TGTACATTCTTGCCTGCGAGGCTGC 430 559 170 Antisense
GAGGCTGCCTATTTTATGCCTGCCT 682 405 187 Antisense
ATTCTTGCCTATTTGGTTGTCTCAG 656 9 277 Antisense
TCAGAAGCCTGCCTATTTTATGCCC 679 623 298 Antisense
TGTTCTGAAGCTTCCACGACTACTA 190 563 427 Antisense
CTACTACCGTTCAACCATCAACAGC 286 225 446 Antisense
CACTGCAGAGCCAACGGATTCACCA 588 197 474 Antisense
GATTCACCAGAGCCTCCAAGTACAT 435 431 490 Antisense
GTACATCTCCAAGCGGCGCTGAAAC 90 461 509 Antisense
Sequence Source Affymetrix Proprietary Database