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[182190_at]

Description Y53H1C.2 /REP_DB=WormBase Gene ID /WP=CE24434 /TR=Q9NA90 /GB=CAB55064.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 02      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 41.9
(-1.6)
A 		23.5
(-3)
A 		35.8
(-2)
A 		99.7
(3)
A 		76
B 22.9
(-2.2)
A 		34
(-1.6)
A 		9.5
(-3)
A 		115.1
(3)
A 		106
C 15.1
(-2.9)
A 		21.2
(-2.6)
A 		13.4
(-3)
A 		136.7
(3)
A 		123
avr 26.6
(-2.6) 		26.2
(-2.6) 		19.6
(-3) 		117.2
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 85.4
(0.3)
A 		145.7
(3)
A 		96.1
(0.8)
A 		12.9
(-3)
A 		84.2
(0.2)
A 		104.1
(1.1)
A 		133
B 61.5
(-0.3)
A 		62
(-0.2)
A 		83.2
(3)
A 		43.5
(-3)
A 		43.7
(-3)
A 		65.8
(0.4)
A 		40
C 144.6
(3)
A 		44.8
(-2.4)
A 		70.2
(-1)
A 		33.4
(-3)
A 		69.3
(-1.1)
A 		46.6
(-2.3)
A 		111
avr 97.2
(3) 		84.2
(1.8) 		83.2
(1.8) 		29.9
(-3) 		65.7
(0.2) 		72.2
(0.8) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 15.2
(3)
A 		5.1
(-3)
A 		9.3
(-0.5)
A 		14.6
(2.6)
A 		10
B 7.3
(-1.6)
A 		8.4
(-1.3)
A 		2.2
(-3)
A 		24.5
(3)
A 		22
C 5
(-2.9)
A 		6.1
(-2.5)
A 		4.7
(-3)
A 		23.1
(3)
A 		18
avr 9.2
(-1.5) 		6.5
(-2.6) 		5.4
(-3) 		20.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 15.7
(-1.5)
A 		51.8
(3)
A 		20.9
(-0.8)
A 		3.3
(-3)
A 		25.4
(-0.3)
A 		25.4
(-0.3)
A 		49
B 21.4
(1.6)
A 		20.6
(1.2)
A 		20.2
(1)
A 		11.5
(-3)
A 		17.8
(-0.1)
A 		24.5
(3)
A 		13
C 53.6
(3)
A 		13.7
(-2.1)
A 		17.9
(-1.6)
A 		6.7
(-3)
A 		22.4
(-1)
A 		15.6
(-1.9)
A 		47
avr 30.2
(3) 		28.7
(2.6) 		19.7
(0.3) 		7.2
(-3) 		21.9
(0.8) 		21.8
(0.8) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182190_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1993
Sequence Type Exemplar sequence
Representative Public ID Y53H1C.2 NCBI
Target Description Y53H1C.2 /REP_DB=WormBase Gene ID /WP=CE24434 /TR=Q9NA90 /GB=CAB55064.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060514
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000010650 ENSEMBL cdna:SNAP chromosome:CEL140:I:11409119:11424384:-1 11/11 None
GENEFINDER00000010654 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11409119:11424543:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11409049-11424474(-) 95.29 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE60712 Hypothetical protein CBG04380 [Caenorhabditis briggsae] 0.0
blast CAB55064 Hypothetical protein Y53H1C.2 [Caenorhabditis elegans] ref|NP_492915.2| Y53H1C.2 [Caenorhabditis elegans] 1.0E-121
blast CAB55064 Hypothetical protein Y53H1C.2 [Caenorhabditis elegans] ref|NP_492915.2| Y53H1C.2 [Caenorhabditis elegans] 1.0E-119
blast XP_135197 PREDICTED: protein tyrosine phosphatase, non-receptor type 23 [Mus musculus] 2.0E-68
blast XP_135197 PREDICTED: protein tyrosine phosphatase, non-receptor type 23 [Mus musculus] 9.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR004328 EMBL-EBI BRO1 7.4E-23
Pfam IPR004328 EMBL-EBI BRO1 7.4E-23
Sequence
Target Sequence 
>C. ELEGANS:182190_AT
ggctgagctcaagactccatggaacactacaccacagtatcatgctccgccaggagctca
agctgctgctccagaagcccccgcggctccggctccgggagccccagctgctcggagcaa
cgtggatttgctgagcgacctgctcggcgactttaacttgcctccacagccgattcagcc
gacggttcacagcactcaacagctccagcatcaggctccccagcagcaggagatgtcgga
ttttcgaattgccgccgccacactgaatccgccgccggaatcggttaaaccggtgaaacc
ggcagccgctgttcagccaatgcctcaaatgacggctcaacaagtaccggctcacggagc
acaagagactccgatcctcaaatcgtctgagctttcgagctcggcgagcacaagcagcag
catcacagagctctcggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGAGCTCAAGACTCCATGGAAC 629 539 3615 Antisense
ACACTACACCACAGTATCATGCTCC 73 111 3638 Antisense
ACGTGGATTTGCTGAGCGACCTGCT 500 95 3734 Antisense
AGGCTCCCCAGCAGCAGGAGATGTC 586 53 3827 Antisense
TGAATCCGCCGCCGGAATCGGTTAA 224 571 3878 Antisense
GTGAAACCGGCAGCCGCTGTTCAGC 128 481 3907 Antisense
GCTGTTCAGCCAATGCCTCAAATGA 345 295 3922 Antisense
GACGGCTCAACAAGTACCGGCTCAC 194 377 3945 Antisense
GACTCCGATCCTCAAATCGTCTGAG 341 373 3981 Antisense
TCGTCTGAGCTTTCGAGCTCGGCGA 601 603 3997 Antisense
CAGCAGCATCACAGAGCTCTCGGAT 487 203 4029 Antisense
Sequence Source Affymetrix Proprietary Database