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[182189_at]

Description K05F6.1 /REP_DB=WormBase Gene ID /WP=CE17159 /TR=O44868 /GB=AAB95029.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 1.3
(-3)
A 		4
(-0.4)
A 		4
(-0.4)
A 		7.6
(3)
A 		6
B 4.5
(-2.7)
A 		4.6
(-2.7)
A 		3.5
(-3)
A 		22.6
(3)
A 		19
C 3.2
(-2.8)
A 		3.8
(-2.7)
A 		2.1
(-3)
A 		32.9
(3)
A 		31
avr 3
(-3) 		4.1
(-2.6) 		3.2
(-2.9) 		21
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 20
(-0.9)
A 		4
(-3)
A 		4.7
(-2.9)
A 		4.7
(-2.9)
A 		4.3
(-3)
A 		50.1
(3)
A 		46
B 3.4
(-2.7)
A 		13.8
(-1)
A 		1.5
(-3)
A 		3.5
(-2.7)
A 		3.2
(-2.7)
A 		37.7
(3)
A 		36
C 2.1
(-2.7)
A 		4.2
(-2.3)
A 		0.8
(-3)
A 		4.3
(-2.3)
A 		1.3
(-2.9)
A 		29.3
(3)
A 		29
avr 8.5
(-2) 		7.3
(-2.2) 		2.3
(-3) 		4.2
(-2.7) 		2.9
(-2.9) 		39
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.5
(-3)
A 		0.9
(1)
A 		1
(2)
A 		1.1
(3)
A 		1
B 1.4
(-2.1)
A 		1.1
(-2.6)
A 		0.8
(-3)
A 		4.8
(3)
A 		4
C 1.1
(-2.5)
A 		1.1
(-2.5)
A 		0.7
(-3)
A 		5.5
(3)
A 		5
avr 1
(-2.6) 		1
(-2.6) 		0.8
(-3) 		3.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.7
(-1.6)
A 		1.4
(-2.8)
A 		1
(-3)
A 		1.2
(-2.9)
A 		1.3
(-2.8)
A 		12.2
(3)
A 		11
B 1.2
(-2.6)
A 		4.6
(-1.1)
A 		0.4
(-3)
A 		0.9
(-2.8)
A 		1.3
(-2.6)
A 		14
(3)
A 		14
C 0.8
(-2.6)
A 		1.3
(-2.3)
A 		0.2
(-3)
A 		0.9
(-2.6)
A 		0.4
(-2.9)
A 		9.8
(3)
A 		10
avr 1.9
(-2.3) 		2.4
(-2) 		0.5
(-3) 		1
(-2.7) 		1
(-2.7) 		12
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182189_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5757
Sequence Type Exemplar sequence
Representative Public ID K05F6.1 NCBI
Target Description K05F6.1 /REP_DB=WormBase Gene ID /WP=CE17159 /TR=O44868 /GB=AAB95029.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061597(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061597 NCBI Caenorhabditis elegans K05F6.1 (K05F6.1) mRNA, complete cds. 11/11 None
SNAP00000019325 ENSEMBL cdna:SNAP chromosome:CEL140:II:1572096:1573306:1 11/11 None
GENEFINDER00000019328 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1572731:1573306:1 10/11 None
K05F6.1 ENSEMBL cdna:known chromosome:CEL140:II:1568673:1573306:1 gene:K05F6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019324 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1568671-1573305(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F6.1
Entrez Gene 187031 Entrez gene
SwissProt O44868 EMBL-EBI
WormBase CE17159 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95029 Hypothetical protein K05F6.1 [Caenorhabditis elegans] ref|NP_493998.1| K05F6.1 [Caenorhabditis elegans] 0.0
blast AAB95029 Hypothetical protein K05F6.1 [Caenorhabditis elegans] ref|NP_493998.1| K05F6.1 [Caenorhabditis elegans] 1.0E-132
blast AAB95029 Hypothetical protein K05F6.1 [Caenorhabditis elegans] ref|NP_493998.1| K05F6.1 [Caenorhabditis elegans] 1.0E-102
blast AAB95024 Hypothetical protein K05F6.4 [Caenorhabditis elegans] ref|NP_493992.1| K05F6.4 [Caenorhabditis elegans] 9.0E-86
blast AAB95024 Hypothetical protein K05F6.4 [Caenorhabditis elegans] ref|NP_493992.1| K05F6.4 [Caenorhabditis elegans] 4.0E-49
blast AAC67475 Hypothetical protein F58E1.14 [Caenorhabditis elegans] ref|NP_494048.1| F58E1.14 [Caenorhabditis elegans] 5.0E-49
blast AAB95027 Hypothetical protein K05F6.7 [Caenorhabditis elegans] ref|NP_493995.1| K05F6.7 [Caenorhabditis elegans] 1.0E-44
Sequence
Target Sequence 
>C. ELEGANS:182189_AT
gaagatttgtcttttaccctatcagatgacgatttcgatgaggggcgatttcaaatgatt
aaggagtccttaagtgaagttcaaatttcgaatattttcataaaattcaataccaaaacg
cagcacatctacaaaattgccaacgcattttcaacaaatggctacattgatttagaacaa
gaaattcagaagactctgagttcctctcaacttttagcactgcatccattgttgtcccag
gagcaaaacacagttgacttagcgtttaaactttcgttaaatgagcttcttctcactagc
tgcacattccttaaagttaccagtacactgttaactgataaggaaatcaatgtgttcttg
aaacattggatggctggactgaaacctgaactcaaatatcttagtattgaaaatgaagaa
caagatttcgaccaaagcactattctcaaaggcattcattatgagtttgcaccaattgat
cgaaaatttctaatgatttataaccagtctgaagtcggaggaatcgatatttatctagca
caaggaatcaaggcaacgatggttttcgacgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATTTGTCTTTTACCCTATCAG 486 337 1126 Antisense
AAATTGCCAACGCATTTTCAACAAA 644 115 1259 Antisense
AGAAGACTCTGAGTTCCTCTCAACT 254 75 1313 Antisense
TCCTCTCAACTTTTAGCACTGCATC 445 593 1327 Antisense
TGCATCCATTGTTGTCCCAGGAGCA 429 577 1346 Antisense
ACTTTCGTTAAATGAGCTTCTTCTC 638 97 1395 Antisense
TTCTCACTAGCTGCACATTCCTTAA 649 691 1415 Antisense
GATTTCGACCAAAGCACTATTCTCA 109 429 1549 Antisense
AGCACTATTCTCAAAGGCATTCATT 345 77 1561 Antisense
GCATTCATTATGAGTTTGCACCAAT 495 307 1577 Antisense
AAGGCAACGATGGTTTTCGACGATG 682 159 1675 Antisense
Sequence Source Affymetrix Proprietary Database