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[182187_s_at]

Description F29G9.1 /REP_DB=WormBase Gene ID /WP=CE09795 /TR=O16373 /GB=AAB65903.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 22.8
(-2.5)
A 		25.4
(-2.4)
A 		8.9
(-3)
A 		182
(3)
M 		173
B 22.6
(-3)
A 		42.6
(2.6)
A 		33.1
(-0.1)
A 		44.2
(3)
A 		22
C 35.8
(-2.3)
A 		52.4
(-1.8)
A 		15.4
(-3)
A 		198.2
(3)
P 		183
avr 27.1
(-2.6) 		40.1
(-2) 		19.1
(-3) 		141.5
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 9.2
(-3)
A 		46.8
(0.6)
A 		71.7
(3)
P 		9.2
(-3)
A 		53.5
(1.3)
A 		44.8
(0.4)
A 		63
B 29.6
(1.2)
A 		37
(3)
A 		12
(-3)
A 		25.4
(0.2)
A 		37
(3)
A 		32.2
(1.8)
A 		25
C 30
(-0.9)
A 		78.4
(3)
P 		5.8
(-2.9)
A 		42.9
(0.1)
A 		17.7
(-1.9)
A 		4.8
(-3)
A 		74
avr 22.9
(-3) 		54.1
(3) 		29.8
(-1.7) 		25.8
(-2.4) 		36.1
(-0.5) 		27.3
(-2.2) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 8.3
(-1.5)
A 		5.5
(-2.2)
A 		2.3
(-3)
A 		26.6
(3)
M 		24
B 7.2
(-3)
A 		10.5
(3)
A 		7.7
(-2.1)
A 		9.4
(1)
A 		3
C 11.9
(-1.6)
A 		15.1
(-0.9)
A 		5.4
(-3)
A 		33.4
(3)
P 		28
avr 9.1
(-1.7) 		10.4
(-1.2) 		5.1
(-3) 		23.1
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.7
(-3)
A 		16.6
(3)
A 		15.6
(2.6)
P 		2.3
(-2.8)
A 		16.1
(2.8)
A 		10.9
(0.7)
A 		15
B 10.3
(0.7)
A 		12.3
(1.7)
A 		2.9
(-3)
A 		6.7
(-1.1)
A 		15
(3)
A 		12
(1.5)
A 		12
C 11.1
(-0.4)
A 		23.9
(3)
P 		1.5
(-3)
A 		8.6
(-1.1)
A 		5.7
(-1.9)
A 		1.6
(-3)
A 		22
avr 7.7
(-2.1) 		17.6
(3) 		6.7
(-2.6) 		5.9
(-3) 		12.3
(0.3) 		8.2
(-1.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182187_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11987
Sequence Type Exemplar sequence
Representative Public ID F29G9.1 NCBI
Target Description F29G9.1 /REP_DB=WormBase Gene ID /WP=CE09795 /TR=O16373 /GB=AAB65903.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072162(11), NM_078328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072162 NCBI Caenorhabditis elegans F29G9.1 (F29G9.1) mRNA, complete cds. 11/11 A 
NM_078328 NCBI Caenorhabditis elegans Y13C8A.1 (Y13C8A.1) mRNA, complete cds. 11/11 None
SNAP00000000279 ENSEMBL cdna:SNAP chromosome:CEL140:V:6042092:6043196:1 11/11 None
GENEFINDER00000015572 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16883546:16885899:1 11/11 None
SNAP00000015562 ENSEMBL cdna:SNAP chromosome:CEL140:X:16883558:16884454:1 11/11 None
F29G9.1 ENSEMBL cdna:known chromosome:CEL140:V:6042092:6043176:1 gene:F29G9.1 11/11 A 
Y13C8A.1 ENSEMBL cdna:known chromosome:CEL140:X:16883586:16884454:1 gene:Y13C8A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027289 2/11 Cross Hyb Matching Probes None
NM_001029077 7/11 Cross Hyb Matching Probes None
SNAP00000035532 5/11 Cross Hyb Matching Probes None
SNAP00000035535 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035543 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035544 1/11 Cross Hyb Matching Probes None
SNAP00000041246 1/11 Cross Hyb Matching Probes None
SNAP00000041247 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041248 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041249 1/11 Cross Hyb Matching Probes None
SNAP00000016074 7/11 Cross Hyb Matching Probes None
SNAP00000038922 7/11 Cross Hyb Matching Probes None
GENEFINDER00000038931 1/11 Cross Hyb Matching Probes None
SNAP00000036378 7/11 Cross Hyb Matching Probes None
Y46H3C.7 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6042119-6043196(+) 67.41 100.0
Public Domain and Genome References
Gene Title

Ensembl F29G9.1
Y13C8A.1
Entrez Gene 185122 Entrez gene
189437 Entrez gene
SwissProt O16373 EMBL-EBI
Q9N581 EMBL-EBI
WormBase CE35297 Wormbase
CE24172 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60433 Hypothetical protein Y13C8A.1 [Caenorhabditis elegans] ref|NP_510729.1| Y13C8A.1 [Caenorhabditis elegans] 7.0E-59
blast AAB65903 Hypothetical protein F29G9.1 [Caenorhabditis elegans] ref|NP_504563.2| F29G9.1 [Caenorhabditis elegans] 3.0E-51
blast AAB65903 Hypothetical protein F29G9.1 [Caenorhabditis elegans] ref|NP_504563.2| F29G9.1 [Caenorhabditis elegans] 4.0E-36
blast AAR85896 Hypothetical protein Y46H3C.7 [Caenorhabditis elegans] ref|NP_001024248.1| Y46H3C.7 [Caenorhabditis elegans] 4.0E-35
blast AAR85896 Hypothetical protein Y46H3C.7 [Caenorhabditis elegans] ref|NP_001024248.1| Y46H3C.7 [Caenorhabditis elegans] 5.0E-34
blast AAR85896 Hypothetical protein Y46H3C.7 [Caenorhabditis elegans] ref|NP_001024248.1| Y46H3C.7 [Caenorhabditis elegans] 3.0E-33
blast AAB65903 Hypothetical protein F29G9.1 [Caenorhabditis elegans] ref|NP_504563.2| F29G9.1 [Caenorhabditis elegans] 2.0E-32
Sequence
Target Sequence 
>C. ELEGANS:182187_S_AT
atgagaaccgatgttgggcccatactgcgatacgatcgggcggttcttgctctatggaat
acttgggtgatgatgtgcagttcttacggtgtagagcatcacatgaagaagcaactccta
ttcaaagctatcgtcaccacctgcataatcaccaagcaacagcaaggatcagcaaaagga
cgaccaacagaagaagaaggaacgaacgacgacggaaagaagacatggacaaaaggtggc
gatagtatggagttgaattggaacgagatctcactcaaaagatctcgagcgacgatggat
cggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGAACCGATGTTGGGCCCATAC 146 43 13 Antisense
CGATGTTGGGCCCATACTGCGATAC 54 249 21 Antisense
TGCGATACGATCGGGCGGTTCTTGC 203 583 38 Antisense
GGCGGTTCTTGCTCTATGGAATACT 288 541 51 Antisense
GGGTGATGATGTGCAGTTCTTACGG 2 497 77 Antisense
GCAGTTCTTACGGTGTAGAGCATCA 693 311 89 Antisense
GAGCATCACATGAAGAAGCAACTCC 413 389 106 Antisense
CAACTCCTATTCAAAGCTATCGTCA 594 187 124 Antisense
CTATTCAAAGCTATCGTCACCACCT 562 223 130 Antisense
TCACCACCTGCATAATCACCAAGCA 690 625 146 Antisense
GATCTCGAGCGACGATGGATCGGGA 408 417 293 Antisense
Sequence Source Affymetrix Proprietary Database