[Home] | [Total List]

[182186_at]

Description D1005.5 /REP_DB=WormBase Gene ID /WP=CE07001 /TR=Q18912 /GB=AAB00584.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 04      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 36.1
(-0.9)
A 		11.8
(-3)
A 		44.5
(-0.2)
A 		82.7
(3)
A 		71
B 51.1
(3)
M 		46.1
(-3)
A 		50.7
(2.5)
A 		49.8
(1.4)
A 		5
C 17.3
(-1.2)
A 		10
(-2.1)
A 		3.2
(-3)
A 		51.1
(3)
A 		48
avr 34.8
(-1.1) 		22.6
(-3) 		32.8
(-1.4) 		61.2
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 63.7
(3)
P 		39
(0.4)
M 		27.2
(-0.8)
A 		21.9
(-1.4)
A 		13.5
(-2.3)
A 		6.8
(-3)
A 		57
B 76
(3)
P 		27.7
(-1.1)
A 		30.9
(-0.9)
A 		6
(-3)
A 		19.9
(-1.8)
A 		35.3
(-0.5)
A 		70
C 65.2
(3)
P 		48.5
(1.2)
A 		34.9
(-0.2)
A 		8.7
(-2.9)
A 		27.3
(-1)
A 		8
(-3)
A 		57
avr 68.3
(3) 		38.4
(-0.2) 		31
(-1) 		12.2
(-3) 		20.2
(-2.1) 		16.7
(-2.5) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 13.1
(3)
A 		2.6
(-3)
A 		11.6
(2.1)
A 		12.1
(2.4)
A 		11
B 16.3
(3)
M 		11.4
(-2.2)
A 		11.7
(-1.8)
A 		10.6
(-3)
A 		6
C 5.7
(0.7)
A 		2.9
(-1.6)
A 		1.1
(-3)
A 		8.6
(3)
A 		8
avr 11.7
(3) 		5.6
(-3) 		8.1
(-0.5) 		10.4
(1.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 11.8
(2)
P 		13.9
(3)
M 		5.9
(-0.9)
A 		5.6
(-1.1)
A 		4.1
(-1.8)
A 		1.7
(-3)
A 		12
B 26.4
(3)
P 		9.2
(-1.2)
A 		7.5
(-1.6)
A 		1.6
(-3)
A 		8.1
(-1.4)
A 		13.2
(-0.2)
A 		25
C 24.2
(3)
P 		14.8
(0.5)
A 		8.9
(-1.1)
A 		1.7
(-3)
A 		8.8
(-1.1)
A 		2.7
(-2.7)
A 		23
avr 20.8
(3) 		12.6
(0.2) 		7.4
(-1.5) 		3
(-3) 		7
(-1.7) 		5.9
(-2) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182186_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18162
Sequence Type Exemplar sequence
Representative Public ID D1005.5 NCBI
Target Description D1005.5 /REP_DB=WormBase Gene ID /WP=CE07001 /TR=Q18912 /GB=AAB00584.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075878(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075878 NCBI Caenorhabditis elegans D1005.5 (D1005.5) mRNA, complete cds. 11/11 None
GENEFINDER00000027973 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1470993:1472914:-1 11/11 None
D1005.5 ENSEMBL cdna:known chromosome:CEL140:X:1470993:1472885:-1 gene:D1005.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1470992-1472914(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1005.5
Entrez Gene 183883 Entrez gene
SwissProt Q18912 EMBL-EBI
WormBase CE35444 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00584 Hypothetical protein D1005.5 [Caenorhabditis elegans] ref|NP_508279.2| D1005.5 [Caenorhabditis elegans] 3.0E-80
blast AAB00584 Hypothetical protein D1005.5 [Caenorhabditis elegans] ref|NP_508279.2| D1005.5 [Caenorhabditis elegans] 2.0E-79
blast CAA98262 Hypothetical protein F15H10.5 [Caenorhabditis elegans] ref|NP_505676.2| F15H10.5 [Caenorhabditis elegans] 1.0E-77
blast CAI46601 Hypothetical protein F15H10.9 [Caenorhabditis elegans] ref|NP_001023807.1| F15H10.9 [Caenorhabditis elegans] 4.0E-52
blast CAA98262 Hypothetical protein F15H10.5 [Caenorhabditis elegans] ref|NP_505676.2| F15H10.5 [Caenorhabditis elegans] 9.0E-44
blast CAI46601 Hypothetical protein F15H10.9 [Caenorhabditis elegans] ref|NP_001023807.1| F15H10.9 [Caenorhabditis elegans] 4.0E-23
Sequence
Target Sequence 
>C. ELEGANS:182186_AT
agtgatcagttttgtgcagctgctccgagacctgtacaggggcagagggctaattaagct
ttacttcgaacttgagaaaatgaatagagacctagaagaagaatattttcgaacgagtat
tcaaattctgatgagtggtgagaaaattccgaagtcaattctcaatcacccgaaagtttt
atttgtgataaaaaaaagaattccaatcgaaaaccaatacctcctatcacatgtttctgc
ggcagatgcaacgtgttaccaacgtaaaaagcgttctagagtcgtcatcgtgttgaacct
taaaattccaaaagttcatcagaaccgtgtgaagaaatgcgtttctttcaataatggctc
actttatcacgtttcggagacggaatcgttgcgaacactgagagtagatatcaagaaatg
tttttttgagaacttgacattttgccctcatgcagcagttcgtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGATCAGTTTTGTGCAGCTGCTC 28 59 303 Antisense
CTGCTCCGAGACCTGTACAGGGGCA 190 237 322 Antisense
CGAAGTCAATTCTCAATCACCCGAA 350 251 452 Antisense
AATCGAAAACCAATACCTCCTATCA 105 161 507 Antisense
TCCTATCACATGTTTCTGCGGCAGA 572 591 524 Antisense
GCGGCAGATGCAACGTGTTACCAAC 434 293 541 Antisense
AAGCGTTCTAGAGTCGTCATCGTGT 112 145 571 Antisense
GCGTTTCTTTCAATAATGGCTCACT 666 291 641 Antisense
TGGCTCACTTTATCACGTTTCGGAG 571 545 657 Antisense
GAGAACTTGACATTTTGCCCTCATG 95 393 730 Antisense
TTGCCCTCATGCAGCAGTTCGTGAA 707 701 744 Antisense
Sequence Source Affymetrix Proprietary Database