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[182185_at]

Description B0554.2 /REP_DB=WormBase Gene ID /WP=CE07774 /TR=P91006 /GB=AAB37615.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 128.6
(-3)
A 		141.8
(-0.8)
A 		144.5
(-0.3)
A 		164.6
(3)
A 		36
B 112.8
(-0.2)
A 		132.3
(3)
A 		125.6
(1.9)
A 		96.1
(-3)
A 		36
C 111.5
(-2.1)
A 		213.7
(3)
A 		92.4
(-3)
A 		122.7
(-1.5)
A 		121
avr 117.6
(-3) 		162.6
(3) 		120.8
(-2.6) 		127.8
(-1.6) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 115.1
(3)
A 		58.9
(-0.4)
A 		15.7
(-3)
A 		80.4
(0.9)
A 		110.3
(2.7)
A 		104.6
(2.4)
A 		99
B 107.2
(-1.9)
A 		131.9
(3)
A 		127.3
(2.1)
A 		103.4
(-2.6)
A 		101.6
(-3)
A 		102.9
(-2.7)
A 		30
C 41
(-1.7)
A 		113.9
(2)
A 		63.2
(-0.5)
A 		134.2
(3)
A 		14
(-3)
A 		91.1
(0.8)
M 		120
avr 87.8
(0.1) 		101.6
(2.3) 		68.7
(-3) 		106
(3) 		75.3
(-1.9) 		99.5
(2) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 46.8
(3)
A 		30.8
(-1.2)
A 		37.8
(0.6)
A 		24.1
(-3)
A 		23
B 36
(3)
A 		32.7
(1.7)
A 		29.1
(0.3)
A 		20.5
(-3)
A 		16
C 36.9
(-0.6)
A 		61.4
(3)
A 		32.2
(-1.3)
A 		20.7
(-3)
A 		41
avr 39.9
(2.5) 		41.6
(3) 		33
(0.4) 		21.8
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 21.2
(0.6)
A 		20.9
(0.5)
A 		3.4
(-3)
A 		20.4
(0.4)
A 		33.3
(3)
A 		25.5
(1.4)
A 		30
B 37.3
(0.6)
A 		43.9
(3)
A 		30.9
(-1.7)
A 		27.4
(-3)
A 		41.3
(2.1)
A 		38.4
(1)
A 		17
C 15.2
(-0.9)
A 		34.8
(3)
A 		16.1
(-0.7)
A 		27
(1.5)
A 		4.5
(-3)
A 		30.5
(2.1)
M 		30
avr 24.6
(-0.1) 		33.2
(3) 		16.8
(-3) 		24.9
(-0) 		26.4
(0.5) 		31.5
(2.4) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182185_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15075
Sequence Type Exemplar sequence
Representative Public ID B0554.2 NCBI
Target Description B0554.2 /REP_DB=WormBase Gene ID /WP=CE07774 /TR=P91006 /GB=AAB37615.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070799 NCBI Caenorhabditis elegans B0554.2 (B0554.2) mRNA, complete cds. 11/11 None
SNAP00000032185 ENSEMBL cdna:SNAP chromosome:CEL140:V:433977:436555:1 11/11 None
GENEFINDER00000032190 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:434027:436555:1 11/11 None
B0554.2 ENSEMBL cdna:known chromosome:CEL140:V:434597:436555:1 gene:B0554.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:434596-436555(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0554.2
Entrez Gene 182033 Entrez gene
SwissProt P91006 EMBL-EBI
WormBase CE07774 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37615 Hypothetical protein B0554.2 [Caenorhabditis elegans] ref|NP_503200.1| B0554.2 [Caenorhabditis elegans] 0.0
blast AAB37613 Hypothetical protein B0554.4 [Caenorhabditis elegans] ref|NP_503198.1| B0554.4 [Caenorhabditis elegans] 1.0E-159
blast AAB70945 Hypothetical protein B0454.8 [Caenorhabditis elegans] ref|NP_494430.1| B0454.8 [Caenorhabditis elegans] 1.0E-141
Protein Domains
Database ID Description E-Value
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 1.7E-29
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 1.9E-69
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.3E-75
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 7.8E-74
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 4.4E-73
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 5.0E-45
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 1.9E-69
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.3E-75
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 7.8E-74
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 4.4E-73
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 5.0E-45
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 1.9E-69
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 2.3E-75
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 7.8E-74
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 4.4E-73
Sequence
Target Sequence 
>C. ELEGANS:182185_AT
aaccgcaacacctggcacaatggattcagtgtccaccatgaaaatcacttgctccggaat
cgccggttacaatgtgcaaatggagctcgacggaaacacgaccccgctagaaaatgcagg
gaatccccctccacaaacggtcacaattaacgccgtctgcaatagtgcagatatgatttg
gaaatatgtttccaatgttggaggagttcccacctcgttggacatcaccaccgtaacatg
tgctcagatcccgaatagagttgaaaggcaatgttctcctactgcagttacgctgggaat
tggggatggtctcacaccacagagattcatcgatgtcacctattcggatttcgcatcaac
tccaatcactggctccctggaaacaacttcaacaatgaaaatcacttgtaccgcaatgcc
cggctacaatgttttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCGCAACACCTGGCACAATGGAT 66 147 1038 Antisense
ACTTGCTCCGGAATCGCCGGTTACA 575 99 1084 Antisense
GAAACACGACCCCGCTAGAAAATGC 445 355 1130 Antisense
AATTAACGCCGTCTGCAATAGTGCA 211 173 1182 Antisense
GACATCACCACCGTAACATGTGCTC 393 369 1258 Antisense
GCAATGTTCTCCTACTGCAGTTACG 648 321 1305 Antisense
TTGGGGATGGTCTCACACCACAGAG 491 707 1337 Antisense
GATGTCACCTATTCGGATTTCGCAT 577 409 1369 Antisense
ATCACTGGCTCCCTGGAAACAACTT 209 29 1402 Antisense
GAAAATCACTTGTACCGCAATGCCC 659 353 1434 Antisense
GCAATGCCCGGCTACAATGTTTTGA 46 319 1450 Antisense
Sequence Source Affymetrix Proprietary Database