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[182184_at]

Description F07G6.2 /REP_DB=WormBase Gene ID /WP=CE07035 /TR=Q19172 /GB=AAA96075.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 8.2
(-2.8)
A 		19
(3)
A 		7.8
(-3)
A 		10.6
(-1.5)
A 		11
B 5.8
(-3)
A 		23.2
(3)
A 		8.9
(-1.9)
A 		6.7
(-2.7)
A 		17
C 8
(-2.6)
A 		8.7
(-2.6)
A 		2.7
(-3)
A 		91.2
(3)
A 		89
avr 7.3
(-2.8) 		17
(-0.9) 		6.5
(-3) 		36.2
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 5.1
(1.2)
A 		2.7
(-3)
A 		4.4
(0)
A 		5.5
(1.9)
A 		6.1
(3)
A 		5.4
(1.8)
A 		3
B 19.2
(-0.9)
A 		4.9
(-2.8)
A 		5.7
(-2.7)
A 		48.6
(3)
A 		15.7
(-1.3)
A 		3.1
(-3)
A 		46
C 4.5
(-2.6)
A 		13
(-1.3)
A 		40.3
(3)
A 		21.7
(0.1)
A 		5.7
(-2.4)
A 		1.8
(-3)
A 		39
avr 9.6
(-1.3) 		6.9
(-2) 		16.8
(0.7) 		25.3
(3) 		9.2
(-1.4) 		3.4
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3
(0.4)
A 		4.1
(3)
A 		2
(-2)
A 		1.6
(-3)
A 		3
B 1.9
(-2.3)
A 		5.7
(3)
A 		2.1
(-2)
A 		1.4
(-3)
A 		4
C 2.6
(-2.3)
A 		2.5
(-2.3)
A 		0.9
(-3)
A 		15.4
(3)
A 		15
avr 2.5
(-1.9) 		4.1
(0.3) 		1.7
(-3) 		6.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1
(-2.3)
A 		1
(-2.3)
A 		1.4
(0.3)
A 		1.8
(3)
A 		1.3
(-0.3)
A 		1
B 6.7
(-0.2)
A 		1.6
(-2.8)
A 		1.4
(-2.9)
A 		12.9
(3)
A 		6.4
(-0.3)
A 		1.2
(-3)
A 		12
C 1.7
(-2.3)
A 		4
(-0.9)
A 		10.3
(3)
A 		4.4
(-0.6)
A 		1.9
(-2.2)
A 		0.6
(-3)
A 		10
avr 3.1
(-0.6) 		2.2
(-1.6) 		4.2
(0.7) 		6.2
(3) 		3.4
(-0.2) 		1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182184_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18160
Sequence Type Exemplar sequence
Representative Public ID F07G6.2 NCBI
Target Description F07G6.2 /REP_DB=WormBase Gene ID /WP=CE07035 /TR=Q19172 /GB=AAA96075.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075917(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075917 NCBI Caenorhabditis elegans F07G6.2 (F07G6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000009997 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1727351:1730708:1 10/11 None
F07G6.2 ENSEMBL cdna:known chromosome:CEL140:X:1727351:1728974:1 gene:F07G6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1727350-1728974(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07G6.2
Entrez Gene 184150 Entrez gene
SwissProt Q19172 EMBL-EBI
WormBase CE07035 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508318 F07G6.2 [Caenorhabditis elegans] gb|AAA96075.1| Hypothetical protein F07G6.2 [Caenorhabditis elegans] 4.0E-76
blast NP_508318 F07G6.2 [Caenorhabditis elegans] gb|AAA96075.1| Hypothetical protein F07G6.2 [Caenorhabditis elegans] 7.0E-69
blast NP_508319 DystroGlycaN family member (dgn-3) [Caenorhabditis elegans] gb|AAA96076.1| Dystroglycan protein 3 [Caenorhabditis elegans] 2.0E-39
Sequence
Target Sequence 
>C. ELEGANS:182184_AT
gagattgttgcttcttcttattactaccgtattggtatttttggtatatgctgatgaaaa
tgaattggaaagtaaattggagtttgagaaagttgtcgtcaggcacaagtatttcagtga
tgatgaagagaaaattggcgcagagcagattccgacccccacgactaaaaaggaggcaat
tccaagttcgaaaaatgaatttaggccaagtacacctgagtacccaatgacttctcaaaa
tcgttttgctagaatgctacaaaccgacattgttactgcaaataattttacttttacaag
tacaaccacctctgcagttgaacttgtgaattccactactaggcttgtgccaacaccgac
aagttcgataccagttgtggatcataagaaggatgtgattgcaactatgaaaattgcaaa
tttatttctgagcacaaaagcaccacaacatacggaaaacgccgagattactaaaaccgc
aagtggcttggaagcaacaacttcatttgattcagatcacttttcgagttcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATTGTTGCTTCTTCTTATTACT 624 397 15 Antisense
AAATTGGCGCAGAGCAGATTCCGAC 547 115 146 Antisense
ACACCTGAGTACCCAATGACTTCTC 401 109 226 Antisense
GCTACAAACCGACATTGTTACTGCA 439 301 270 Antisense
CTTTTACAAGTACAACCACCTCTGC 135 187 305 Antisense
AACCACCTCTGCAGTTGAACTTGTG 450 137 318 Antisense
GAATTCCACTACTAGGCTTGTGCCA 53 325 342 Antisense
GTGCCAACACCGACAAGTTCGATAC 65 479 361 Antisense
GCACCACAACATACGGAAAACGCCG 393 313 454 Antisense
ACGCCGAGATTACTAAAACCGCAAG 99 55 473 Antisense
GATTCAGATCACTTTTCGAGTTCGC 226 431 523 Antisense
Sequence Source Affymetrix Proprietary Database