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[182182_at]

Description T28F2.2 /REP_DB=WormBase Gene ID /WP=CE14353 /TR=O01659 /GB=AAB53058.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 74      4grp_high_8_8 > 20      6grp_total > 65      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 397
1 2 3 4 range
A 457.8
(-1)
P 		475.5
(-0.7)
P 		335.2
(-3)
P 		697.3
(3)
P 		362
B 495.4
(1)
P 		363.9
(-1.7)
A 		300.3
(-3)
P 		594.3
(3)
P 		294
C 468.7
(1)
P 		336.4
(-3)
A 		369.1
(-2)
P 		535.1
(3)
P 		199
avr 474
(0) 		391.9
(-1.8) 		334.9
(-3) 		608.9
(3) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 501.9
(1.1)
M 		418.3
(-3)
P 		539.5
(3)
P 		475
(-0.2)
P 		434.3
(-2.2)
P 		502
(1.1)
P 		121
B 419.7
(-1.4)
P 		335.7
(-3)
P 		647.3
(3)
P 		421
(-1.4)
P 		493.4
(0)
P 		577.8
(1.7)
P 		312
C 343.5
(-3)
P 		476.3
(-0.2)
P 		417
(-1.4)
P 		517.9
(0.7)
P 		396.1
(-1.9)
P 		625.9
(3)
P 		282
avr 421.7
(-2.6) 		410.1
(-3) 		534.6
(1.7) 		471.3
(-0.7) 		441.3
(-1.8) 		568.6
(3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 166.7
(3)
P 		103.2
(-1.8)
P 		87.6
(-3)
P 		102.1
(-1.9)
P 		79
B 158
(3)
P 		89.9
(-1.6)
A 		69.6
(-3)
P 		126.6
(0.9)
P 		88
C 155.2
(3)
P 		96.7
(-2.4)
A 		128.6
(0.5)
P 		90.2
(-3)
P 		65
avr 160
(3) 		96.6
(-2.9) 		95.3
(-3) 		106.3
(-2) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 92.5
(-3)
M 		148.8
(3)
P 		117.5
(-0.3)
P 		120.5
(-0)
P 		131.1
(1.1)
P 		122.2
(0.2)
P 		56
B 146
(-1)
P 		111.8
(-3)
P 		157.2
(-0.4)
P 		111.5
(-3)
P 		200.5
(2.1)
P 		215.5
(3)
P 		104
C 127.3
(-1.7)
P 		145.3
(-0.7)
P 		106.1
(-2.9)
P 		104.2
(-3)
P 		128.2
(-1.6)
P 		209.5
(3)
P 		105
avr 121.9
(-2.2) 		135.3
(-1) 		126.9
(-1.7) 		112.1
(-3) 		153.3
(0.5) 		182.4
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182182_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.275
Sequence Type Exemplar sequence
Representative Public ID T28F2.2 NCBI
Target Description T28F2.2 /REP_DB=WormBase Gene ID /WP=CE14353 /TR=O01659 /GB=AAB53058.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058790(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058790 NCBI Caenorhabditis elegans T28F2.2 (T28F2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000038914 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3637069:3638770:1 11/11 None
SNAP00000038904 ENSEMBL cdna:SNAP chromosome:CEL140:I:3637577:3641349:1 9/11 None
T28F2.2 ENSEMBL cdna:known chromosome:CEL140:I:3637355:3638796:1 gene:T28F2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3637068-3638770(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28F2.2
Entrez Gene 189048 Entrez gene
SwissProt O01659 EMBL-EBI
WormBase CE31075 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53053 Hypothetical protein T28F2.1 [Caenorhabditis elegans] ref|NP_491192.1| T28F2.1 [Caenorhabditis elegans] 1.0E-120
blast NP_504672 EGAP9.3 [Caenorhabditis elegans] gb|AAC25845.2| Hypothetical protein EGAP9.3 [Caenorhabditis elegans] 1.0E-117
blast NP_504671 FUcosyl Transferase family member (fut-2) [Caenorhabditis elegans] gb|AAC25844.1| Fucosyl transferase protein 2 [Caenorhabditis elegans] 1.0E-101
blast AAB53058 Hypothetical protein T28F2.2 [Caenorhabditis elegans] ref|NP_491191.2| T28F2.2 [Caenorhabditis elegans] 1.0E-98
blast AAB53058 Hypothetical protein T28F2.2 [Caenorhabditis elegans] ref|NP_491191.2| T28F2.2 [Caenorhabditis elegans] 3.0E-98
blast CAE66650 Hypothetical protein CBG11987 [Caenorhabditis briggsae] 3.0E-65
blast CAE66650 Hypothetical protein CBG11987 [Caenorhabditis briggsae] 3.0E-61
blast XP_393404 PREDICTED: hypothetical protein XP_393404 [Apis mellifera] 6.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 4.1E-7
Sequence
Target Sequence 
>C. ELEGANS:182182_AT
tctcggagacatggagtgcccgtcgtggcttcttgaggaaatttgcacgaacttttcgaa
tttgactgtgctcaaattcaaggagctctgcaatcgagcatcacatttggttctctgtgg
acacgacaagccaatactttcggatacttcagaaggaatcaattctgttaataatcacac
gaatctcgttttaatcggaaactggcttctgctaaaacctgctggctatgattgcccatc
aacagatcttgagaaagaagtcgttcaactcggattgccaccagagcacggaattcaact
ccgtaaagtctacgaaaattacaaatcagaattgagggagaaagtttgcagttctgttta
cagagagccccatgcaaccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCGGAGACATGGAGTGCCCGTCG 594 611 162 Antisense
TGCCCGTCGTGGCTTCTTGAGGAAA 391 585 178 Antisense
GAACTTTTCGAATTTGACTGTGCTC 186 351 210 Antisense
TCGAGCATCACATTTGGTTCTCTGT 26 603 255 Antisense
GGTTCTCTGTGGACACGACAAGCCA 262 507 270 Antisense
AGCCAATACTTTCGGATACTTCAGA 55 85 290 Antisense
AACTGGCTTCTGCTAAAACCTGCTG 140 143 361 Antisense
AACCTGCTGGCTATGATTGCCCATC 431 147 377 Antisense
AGAAGTCGTTCAACTCGGATTGCCA 692 73 417 Antisense
GGATTGCCACCAGAGCACGGAATTC 686 507 433 Antisense
TTTACAGAGAGCCCCATGCAACCAT 575 671 518 Antisense
Sequence Source Affymetrix Proprietary Database