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[182179_s_at]

Description F45E4.7 /REP_DB=WormBase Gene ID /WP=CE28333 /TR=Q94232 /GB=AAK29823.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      6grp_highest_nonorm > 90      6grp_total > 23      4grp_total > 58      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 53.3
(-0.7)
P 		88.1
(2.9)
P 		89.4
(3)
P 		31.4
(-3)
A 		58
B 50.7
(-0.6)
P 		102.9
(3)
P 		99.8
(2.8)
P 		16.5
(-3)
A 		86
C 67
(-1.8)
P 		127.3
(3)
P 		104.4
(1.2)
P 		51.8
(-3)
A 		76
avr 57
(-1) 		106.1
(3) 		97.9
(2.3) 		33.2
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 110.4
(1.5)
P 		106.9
(1.2)
P 		129.2
(3)
P 		109.5
(1.4)
P 		71.6
(-1.5)
P 		53.2
(-3)
P 		76
B 116.6
(3)
P 		114.5
(2.8)
P 		78.8
(-0.2)
P 		87.9
(0.6)
P 		45.1
(-3)
P 		48.8
(-2.7)
P 		72
C 135.4
(3)
P 		93.4
(0)
P 		101
(0.6)
P 		79.9
(-0.9)
P 		50.2
(-3)
P 		72
(-1.5)
P 		85
avr 120.8
(3) 		104.9
(1.5) 		103
(1.4) 		92.4
(0.4) 		55.6
(-3) 		58
(-2.8) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 19.4
(1.7)
P 		19.1
(1.6)
P 		23.4
(3)
P 		4.6
(-3)
A 		19
B 16.2
(0.5)
P 		25.4
(3)
P 		23.1
(2.4)
P 		3.5
(-3)
A 		22
C 22.2
(-0.1)
P 		36.6
(3)
P 		36.4
(3)
P 		8.7
(-3)
A 		28
avr 19.3
(0.7) 		27
(2.8) 		27.6
(3) 		5.6
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 20.4
(-1.2)
P 		38
(3)
P 		28.1
(0.6)
P 		27.8
(0.6)
P 		21.6
(-0.9)
P 		13
(-3)
P 		25
B 40.6
(3)
P 		38.1
(2.3)
P 		19.1
(-2.8)
P 		23.3
(-1.6)
P 		18.3
(-3)
P 		18.2
(-3)
P 		22
C 50.2
(3)
P 		28.5
(-0.8)
P 		25.7
(-1.3)
P 		16.1
(-3)
P 		16.3
(-3)
P 		24.1
(-1.6)
P 		34
avr 37.1
(3) 		34.9
(2.3) 		24.3
(-1.1) 		22.4
(-1.7) 		18.7
(-2.9) 		18.4
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182179_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9367
Sequence Type Exemplar sequence
Representative Public ID F45E4.7 NCBI
Target Description F45E4.7 /REP_DB=WormBase Gene ID /WP=CE28333 /TR=Q94232 /GB=AAK29823.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028032(11), NM_001028034(11), NM_001028033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028032 NCBI Caenorhabditis elegans F45E4.7a (F45E4.7) mRNA, complete cds. 11/11 None
NM_001028034 NCBI Caenorhabditis elegans F45E4.7c (F45E4.7) mRNA, complete cds. 11/11 None
NM_001028033 NCBI Caenorhabditis elegans F45E4.7b (F45E4.7) mRNA, complete cds. 11/11 None
SNAP00000024166 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7635777:7638107:-1 11/11 None
GENEFINDER00000024181 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7635777:7641805:-1 11/11 None
F45E4.7a ENSEMBL cdna:known chromosome:CEL140:IV:7635644:7641842:-1 gene:F45E4.7 11/11 None
F45E4.7b.1 ENSEMBL cdna:known chromosome:CEL140:IV:7635777:7638146:-1 gene:F45E4.7 11/11 None
F45E4.7c ENSEMBL cdna:known chromosome:CEL140:IV:7635777:7640272:-1 gene:F45E4.7 11/11 None
F45E4.7b.2 ENSEMBL cdna:known chromosome:CEL140:IV:7635777:7639139:-1 gene:F45E4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7635782-7641811(-) 100.0 100.0
Public Domain and Genome References
Ensembl F45E4.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV34790 Hypothetical protein F45E4.7a [Caenorhabditis elegans] ref|NP_001023203.1| F45E4.7a [Caenorhabditis elegans] 0.0
blast AAV34791 Hypothetical protein F45E4.7c [Caenorhabditis elegans] ref|NP_001023205.1| F45E4.7c [Caenorhabditis elegans] 0.0
blast CAE61931 Hypothetical protein CBG05928 [Caenorhabditis briggsae] 0.0
blast AAO91718 Hypothetical protein F45E4.7b [Caenorhabditis elegans] ref|NP_001023204.1| F45E4.7b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Recombinase DNA-binding domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Recombinase DNA-binding domain 4.40000009536743
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023203.1 1 196-218
NP_001023205.1 1 112-134
F45E4.7a 1 196-218
F45E4.7c 1 112-134
GENEFINDER00000024181 1 232-254
Sequence
Target Sequence 
>C. ELEGANS:182179_S_AT
acgacacaacgactttcccaataagtgatccaacaatgctttataattctaatgttggag
caatagtgattccacttgcattcattgaacctccaatttatttacctggtgatgaagttc
ctatgtatggtatctattcaagtcttggaataaccacgcttcaaatgatttcaaaagttt
tttggcaaggcttagataaaacgtctcaactggaatgtcttgacaacgtattccgtggat
tcctggatgcaaaccgacagagatcaccaaacattgaacctgaacttttagcaactattg
aattagcagatgcatttaaaagtgcattgtattcttatgcaaaatggcaaaatgatcatc
atattcatcacgagaagacgcttccagcattcgattcaactgatagtatgagatctctaa
tgctcactttttctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACACAACGACTTTCCCAATAAG 287 91 2219 Antisense
GATTCCACTTGCATTCATTGAACCT 547 433 2286 Antisense
GAACCTCCAATTTATTTACCTGGTG 51 347 2305 Antisense
AAGTTCCTATGTATGGTATCTATTC 606 155 2333 Antisense
AAGTCTTGGAATAACCACGCTTCAA 467 155 2358 Antisense
TAAAACGTCTCAACTGGAATGTCTT 422 637 2415 Antisense
GACAACGTATTCCGTGGATTCCTGG 224 363 2440 Antisense
GGATTCCTGGATGCAAACCGACAGA 320 509 2455 Antisense
GAACCTGAACTTTTAGCAACTATTG 430 345 2494 Antisense
TATTCATCACGAGAAGACGCTTCCA 228 661 2580 Antisense
GATCTCTAATGCTCACTTTTTCTAC 174 419 2630 Antisense
Sequence Source Affymetrix Proprietary Database