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[182178_at]

Description D1005.2 /REP_DB=WormBase Gene ID /WP=CE06998 /TR=Q18910 /GB=AAB00582.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 445
1 2 3 4 range
A 232.6
(0.2)
P 		381.5
(2.4)
P 		421.1
(3)
P 		13.3
(-3)
A 		408
B 198.6
(-0.5)
P 		291.3
(0.8)
P 		455.9
(3)
P 		10.9
(-3)
A 		445
C 231.1
(0.8)
P 		251.9
(1.2)
P 		343.2
(3)
P 		43.8
(-3)
A 		299
avr 220.8
(0.1) 		308.2
(1.5) 		406.7
(3) 		22.7
(-3) 		384

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 327.6
(3)
P 		224.9
(0.5)
P 		288
(2)
P 		180.3
(-0.6)
P 		103
(-2.5)
P 		80.6
(-3)
A 		247
B 354.4
(3)
P 		240.6
(0.3)
P 		241
(0.4)
P 		135
(-2.1)
P 		129.5
(-2.3)
P 		97.4
(-3)
M 		257
C 300.9
(3)
P 		234.5
(1.4)
P 		248.1
(1.7)
P 		164.6
(-0.2)
P 		159.1
(-0.4)
P 		48.2
(-3)
A 		253
avr 327.6
(3) 		233.3
(0.8) 		259
(1.4) 		160
(-1) 		130.5
(-1.7) 		75.4
(-3) 		252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 84.7
(1.6)
P 		82.8
(1.5)
P 		110.1
(3)
P 		1.9
(-3)
A 		108
B 63.3
(0.5)
P 		71.9
(1)
P 		105.6
(3)
P 		2.3
(-3)
A 		103
C 76.5
(0.7)
P 		72.4
(0.5)
P 		119.6
(3)
P 		7.4
(-3)
A 		112
avr 74.8
(0.9) 		75.7
(1) 		111.8
(3) 		3.9
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 60.4
(1.1)
P 		80
(3)
P 		62.7
(1.3)
P 		45.7
(-0.4)
P 		31.1
(-1.9)
P 		19.6
(-3)
A 		60
B 123.3
(3)
P 		80.1
(0)
P 		58.5
(-1.4)
P 		35.8
(-3)
P 		52.6
(-1.8)
P 		36.3
(-3)
M 		88
C 111.5
(3)
P 		71.5
(0.5)
P 		63.1
(-0)
P 		33.1
(-1.9)
P 		51.5
(-0.8)
P 		16.1
(-3)
A 		95
avr 98.4
(3) 		77.2
(1.3) 		61.4
(0) 		38.2
(-1.9) 		45.1
(-1.3) 		24
(-3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182178_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18512
Sequence Type Exemplar sequence
Representative Public ID D1005.2 NCBI
Target Description D1005.2 /REP_DB=WormBase Gene ID /WP=CE06998 /TR=Q18910 /GB=AAB00582.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075876 NCBI Caenorhabditis elegans D1005.2 (D1005.2) mRNA, complete cds. 11/11 None
SNAP00000027962 ENSEMBL cdna:SNAP chromosome:CEL140:X:1460288:1462682:1 11/11 None
GENEFINDER00000027972 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1460288:1462682:1 11/11 None
D1005.2 ENSEMBL cdna:known chromosome:CEL140:X:1459093:1462715:1 gene:D1005.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1459114-1462682(+) 94.64 100.0
Public Domain and Genome References
Gene Title
Ensembl D1005.2
Entrez Gene 180484 Entrez gene
SwissProt Q18910 EMBL-EBI
WormBase CE29741 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00582 Hypothetical protein D1005.2 [Caenorhabditis elegans] ref|NP_508277.2| D1005.2 [Caenorhabditis elegans] 0.0
blast CAE56727 Hypothetical protein CBG24514 [Caenorhabditis briggsae] 0.0
blast CAE56727 Hypothetical protein CBG24514 [Caenorhabditis briggsae] 1.0E-155
blast AAW42292 UTP-glucose-1-phosphate uridylyltransferase, putative [Cryptococcus neoformans var. neoformans JEC21] gb|EAL22213.1| hypothetical protein CNBC3510 [Cryptococcus neoformans var. neoformans B-3501A] ref|XP_569599.1| UTP-glucose-1-phosphate uridylyltransferase, putative [Cryptococcus neoformans var. neoformans JEC21] 8.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR002618 EMBL-EBI UTP--glucose-1-phosphate uridylyltransferase 1.0E-113
Pfam IPR002618 EMBL-EBI UTP--glucose-1-phosphate uridylyltransferase 1.6E-90
Sequence
Target Sequence 
>C. ELEGANS:182178_AT
ggaggccgtatgatgcatctcgagatgccacaggtaccggcggaaaacttgccggatttc
tgctctactaaagtttttaaaattttcaataccaataacatttatgtgaacctaaaagct
gtgaaaaagttgttgccagacatcaagagcgagattattgtgaacaaaaagactattaga
agccgggaagttcttcaactcgagttttcaattggagggtgtatcaagaattttgataac
gctttgtgcgtccatgtagaaagaaagcgattccgtcccgtcaagaacctcggagatctt
ctatccctccgttccaccctctgcgacctagaccactccaccttcaaagtgcaccataac
catgaactaggagctccaccagtgatcagcctagatccatcgatctataactcagtagaa
gtagtggatctgaaattccctcatccattggttatggacaattgctccgagtttgctgta
gtcggagatgtgactttcgggaaaaacgtgaagctttctggaaaggttactgtgaatgga
aagaccgagagccctggcgtcgtgccagatggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGCCGTATGATGCATCTCGAGA 138 515 766 Antisense
CATCTCGAGATGCCACAGGTACCGG 99 211 781 Antisense
GAAAACTTGCCGGATTTCTGCTCTA 525 355 808 Antisense
GAAGCCGGGAAGTTCTTCAACTCGA 121 345 944 Antisense
AAGAACCTCGGAGATCTTCTATCCC 194 153 1048 Antisense
CACTCCACCTTCAAAGTGCACCATA 144 197 1099 Antisense
ACTAGGAGCTCCACCAGTGATCAGC 578 101 1131 Antisense
GTGATCAGCCTAGATCCATCGATCT 114 485 1147 Antisense
GGATCTGAAATTCCCTCATCCATTG 668 511 1191 Antisense
AATGGAAAGACCGAGAGCCCTGGCG 110 161 1300 Antisense
AGCCCTGGCGTCGTGCCAGATGGTA 480 83 1315 Antisense
Sequence Source Affymetrix Proprietary Database