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[182177_at]

Description F40G9.7 /REP_DB=WormBase Gene ID /WP=CE19854 /TR=Q9TZ78 /GB=AAC68794.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 13.5
(-2.8)
A 		50.8
(0.6)
A 		76.1
(3)
A 		11.7
(-3)
A 		64
B 40.4
(-0.1)
A 		19.2
(-3)
A 		63.8
(3)
A 		60.4
(2.5)
A 		45
C 15.9
(-3)
A 		36
(0.5)
A 		22.3
(-1.9)
A 		50.3
(3)
M 		34
avr 23.3
(-3) 		35.3
(-0.7) 		54.1
(3) 		40.8
(0.4) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 46.8
(3)
A 		30.5
(0.6)
A 		6.8
(-3)
A 		34
(1.1)
A 		13.1
(-2.1)
A 		39.7
(1.9)
A 		40
B 10.9
(-3)
A 		35.2
(0.3)
A 		55.7
(3)
A 		44
(1.4)
A 		14.2
(-2.6)
A 		20.4
(-1.7)
A 		45
C 44.9
(1.8)
A 		14.4
(-2)
A 		12.2
(-2.3)
A 		54.2
(3)
A 		6.2
(-3)
A 		7.9
(-2.8)
A 		48
avr 34.2
(1.2) 		26.7
(-0.2) 		24.9
(-0.5) 		44.1
(3) 		11.2
(-3) 		22.7
(-0.9) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 4.9
(-1.9)
A 		11
(0.1)
A 		19.9
(3)
A 		1.7
(-3)
A 		18
B 12.9
(1.9)
A 		4.7
(-3)
A 		14.8
(3)
A 		12.9
(1.9)
A 		10
C 5.2
(-3)
A 		10.4
(3)
A 		7.8
(-0)
A 		8.5
(0.8)
M 		5
avr 7.7
(-3) 		8.7
(-2.1) 		14.2
(3) 		7.7
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.6
(1.6)
A 		10.8
(3)
A 		1.5
(-3)
A 		8.6
(1.6)
A 		4
(-1.4)
A 		9.7
(2.3)
A 		9
B 3.8
(-3)
A 		11.7
(1.9)
A 		13.5
(3)
A 		11.7
(1.9)
A 		5.8
(-1.8)
A 		7.6
(-0.6)
A 		10
C 16.6
(3)
A 		4.4
(-2)
A 		3.1
(-2.5)
A 		10.9
(0.7)
A 		2
(-3)
A 		2.7
(-2.7)
A 		15
avr 9.7
(2.4) 		9
(1.7) 		6
(-1.1) 		10.4
(3) 		3.9
(-3) 		6.7
(-0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182177_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8255
Sequence Type Exemplar sequence
Representative Public ID F40G9.7 NCBI
Target Description F40G9.7 /REP_DB=WormBase Gene ID /WP=CE19854 /TR=Q9TZ78 /GB=AAC68794.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064764 NCBI Caenorhabditis elegans F40G9.7 (F40G9.7) mRNA, complete cds. 11/11 None
F40G9.7 ENSEMBL cdna:known chromosome:CEL140:III:165689:166242:1 gene:F40G9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:165688-166231(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40G9.7
Entrez Gene 175183 Entrez gene
SwissProt Q9TZ78 EMBL-EBI
WormBase CE19854 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68794 Hypothetical protein F40G9.7 [Caenorhabditis elegans] ref|NP_497165.1| F40G9.7 [Caenorhabditis elegans] 2.0E-90
Sequence
Target Sequence 
>C. ELEGANS:182177_AT
gaaattctcctttctcatattcactatggtattagcttgtactatgcaagttccgcctag
ctgctttcccgatccagactctcctgaaagtcaagcgaaattcttcctggatggaatgtt
gcagacgattaaatcgccaagtatagtgtttattaagatttattttggcaaaaatttctt
atttcacgggtgcaaaagagattactcgttagatgatgtagtggacattattgaggaatc
agacatgaataaattttcctacaaaattacaaactccagttttggtctctttggtcatta
tttatattttgacgcaacactgaccggcttgggctctcccccgctggacccgcttaatgt
tggatttgttgtgcacacatttgtgttaaatgcttatcaacacacgttgaccacagcgcg
agagaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTCTCCTTTCTCATATTCACT 608 363 15 Antisense
TACTATGCAAGTTCCGCCTAGCTGC 379 645 54 Antisense
CCGATCCAGACTCTCCTGAAAGTCA 70 265 83 Antisense
GTCAAGCGAAATTCTTCCTGGATGG 342 463 104 Antisense
ACAAACTCCAGTTTTGGTCTCTTTG 231 111 283 Antisense
GTTTTGGTCTCTTTGGTCATTATTT 240 447 293 Antisense
TATTTTGACGCAACACTGACCGGCT 80 661 319 Antisense
CGCTGGACCCGCTTAATGTTGGATT 261 241 356 Antisense
TGTTGGATTTGTTGTGCACACATTT 185 563 372 Antisense
GTTAAATGCTTATCAACACACGTTG 521 445 399 Antisense
ACGTTGACCACAGCGCGAGAGAAGA 517 93 418 Antisense
Sequence Source Affymetrix Proprietary Database