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[182176_at]

Description F07G6.8 /REP_DB=WormBase Gene ID /WP=CE07041 /TR=Q19170 /GB=AAA96073.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 27      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 6.7
(-2.7)
A 		55.4
(3)
A 		3.9
(-3)
A 		12.1
(-2)
A 		52
B 6.7
(-2.8)
A 		5.7
(-3)
A 		6
(-2.9)
A 		30.6
(3)
A 		25
C 7.6
(-2.7)
A 		26.7
(0.4)
A 		5.8
(-3)
A 		42.3
(3)
A 		37
avr 7
(-2.6) 		29.3
(3) 		5.2
(-3) 		28.3
(2.8) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 9.7
(-2.7)
A 		9.2
(-2.8)
A 		7.1
(-2.9)
A 		6.5
(-3)
A 		75.4
(3)
A 		17
(-2.1)
A 		69
B 8.9
(-2.5)
A 		18.6
(1.3)
A 		7.6
(-3)
A 		9.6
(-2.2)
A 		11.2
(-1.6)
A 		23
(3)
A 		15
C 6
(-3)
A 		31.1
(2.6)
A 		23.3
(0.9)
A 		7.9
(-2.6)
A 		10
(-2.1)
A 		32.8
(3)
A 		27
avr 8.2
(-3) 		19.6
(-0.1) 		12.7
(-1.8) 		8
(-3) 		32.2
(3) 		24.3
(1) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.4
(-2.2)
A 		12
(3)
A 		1
(-3)
A 		1.8
(-2.6)
A 		11
B 2.1
(-2.2)
A 		1.4
(-3)
A 		1.4
(-3)
A 		6.5
(3)
A 		5
C 2.5
(-2.5)
A 		7.7
(3)
A 		2
(-3)
A 		7.1
(2.4)
A 		6
avr 2.3
(-2.1) 		7
(3) 		1.5
(-3) 		5.1
(0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.8
(-2.9)
A 		3.3
(-2.5)
A 		1.5
(-3)
A 		1.6
(-3)
A 		22.8
(3)
A 		4.1
(-2.3)
A 		21
B 3.1
(-1.9)
A 		6.2
(0.9)
A 		1.8
(-3)
A 		2.5
(-2.4)
A 		4.5
(-0.6)
A 		8.6
(3)
A 		7
C 2.2
(-2.6)
A 		9.5
(2)
A 		5.9
(-0.3)
A 		1.6
(-3)
A 		3.2
(-2)
A 		11
(3)
A 		9
avr 2.4
(-2.6) 		6.3
(0.2) 		3.1
(-2.1) 		1.9
(-3) 		10.2
(3) 		7.9
(1.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182176_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18508
Sequence Type Exemplar sequence
Representative Public ID F07G6.8 NCBI
Target Description F07G6.8 /REP_DB=WormBase Gene ID /WP=CE07041 /TR=Q19170 /GB=AAA96073.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075915 NCBI Caenorhabditis elegans F07G6.8 (F07G6.8) mRNA, complete cds. 11/11 None
SNAP00000009968 ENSEMBL cdna:SNAP chromosome:CEL140:X:1716640:1720423:-1 11/11 None
GENEFINDER00000009996 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1719889:1720423:-1 11/11 None
F07G6.8 ENSEMBL cdna:known chromosome:CEL140:X:1720088:1720423:-1 gene:F07G6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1720087-1720423(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07G6.8
Entrez Gene 184155 Entrez gene
SwissProt Q19170 EMBL-EBI
WormBase CE07041 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508315 F07G6.7 [Caenorhabditis elegans] gb|AAA96072.1| Hypothetical protein F07G6.7 [Caenorhabditis elegans] 5.0E-63
blast AAC68934 Hypothetical protein T12B5.10 [Caenorhabditis elegans] ref|NP_497300.1| T12B5.10 [Caenorhabditis elegans] 3.0E-62
blast AAC68933 Hypothetical protein T12B5.8 [Caenorhabditis elegans] ref|NP_497299.2| T12B5.8 [Caenorhabditis elegans] 1.0E-59
blast NP_508316 F07G6.8 [Caenorhabditis elegans] gb|AAA96073.1| Hypothetical protein F07G6.8 [Caenorhabditis elegans] 9.0E-45
blast NP_508316 F07G6.8 [Caenorhabditis elegans] gb|AAA96073.1| Hypothetical protein F07G6.8 [Caenorhabditis elegans] 1.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-32
Sequence
Target Sequence 
>C. ELEGANS:182176_AT
attcgaggcacctgtcaaacacttccctgcgggcactactacggatgagctgaagaagtc
gggtgccccgagcccgttcgatcgctatttgagacgtgaaaccggagcaatggagaaagc
cttgggacctcctgaaccaaaggccttcggactattctcaacattgaaaagtagattttc
ggcttcaactaaattgcttgaatctaaatcttctaccgtctcccagaagatgtcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGAGGCACCTGTCAAACACTTC 266 9 18 Antisense
CGGGCACTACTACGGATGAGCTGAA 372 245 47 Antisense
TGAGCTGAAGAAGTCGGGTGCCCCG 676 569 63 Antisense
AGCCCGTTCGATCGCTATTTGAGAC 110 81 88 Antisense
GAGACGTGAAACCGGAGCAATGGAG 360 393 108 Antisense
GGAGAAAGCCTTGGGACCTCCTGAA 680 517 129 Antisense
TCCTGAACCAAAGGCCTTCGGACTA 134 589 147 Antisense
CCTTCGGACTATTCTCAACATTGAA 111 269 161 Antisense
GATTTTCGGCTTCAACTAAATTGCT 220 425 191 Antisense
TGAATCTAAATCTTCTACCGTCTCC 111 575 216 Antisense
CTACCGTCTCCCAGAAGATGTCGGA 43 227 230 Antisense
Sequence Source Affymetrix Proprietary Database