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[182175_s_at]

Description B0414.8 /REP_DB=WormBase Gene ID /WP=CE07738 /TR=O01839 /GB=AAB57721.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 86      6grp_total > 79      4grp_total > 0      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 879.8
(2.8)
P 		774.4
(-3)
P 		785.7
(-2.4)
P 		882.8
(3)
P 		108
B 714.6
(-3)
P 		796.2
(-0.2)
P 		873.6
(2.4)
P 		892.2
(3)
P 		178
C 905.9
(-2.6)
P 		896.3
(-3)
P 		1043
(3)
P 		951
(-0.8)
P 		147
avr 833.4
(-2.2) 		822.3
(-3) 		900.8
(2.5) 		908.7
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 625
1 2 3 4 5 6 range
A 1083.5
(3)
P 		848.1
(-3)
P 		1012.2
(1.2)
P 		1052.4
(2.2)
P 		1063.1
(2.5)
P 		1071.2
(2.7)
P 		235
B 910.5
(-1)
P 		1241.9
(3)
P 		743.4
(-3)
P 		1070.6
(0.9)
P 		988.5
(-0)
P 		1155.5
(2)
P 		499
C 802.4
(-0.9)
P 		1072.1
(2.2)
P 		985.1
(1.2)
P 		617.3
(-3)
P 		939.9
(0.7)
P 		1143.7
(3)
P 		526
avr 932.1
(-2.5) 		1054
(1) 		913.6
(-3) 		913.4
(-3) 		997.2
(-0.6) 		1123.5
(3) 		210
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 320.3
(3)
P 		168.1
(-1.8)
P 		205.4
(-0.6)
P 		129.2
(-3)
P 		191
B 227.9
(3)
P 		196.7
(-2)
P 		202.4
(-1)
P 		190.1
(-3)
P 		38
C 299.9
(1.1)
P 		257.7
(-0.1)
P 		363.5
(3)
P 		160.4
(-3)
P 		203
avr 282.7
(3) 		207.5
(-0.7) 		257.1
(1.7) 		159.9
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 199.7
(-3)
P 		301.6
(2)
P 		220.4
(-2)
P 		266.9
(0.3)
P 		320.8
(3)
P 		260.8
(0)
P 		121
B 316.8
(0.3)
P 		413.4
(2.6)
P 		180.5
(-3)
P 		283.6
(-0.5)
P 		401.6
(2.3)
P 		430.9
(3)
P 		250
C 297.4
(1)
P 		327.1
(1.7)
P 		250.7
(-0.1)
P 		124.1
(-3)
P 		304.1
(1.2)
P 		382.9
(3)
P 		259
avr 271.3
(-0.7) 		347.4
(2.5) 		217.2
(-3) 		224.9
(-2.7) 		342.2
(2.3) 		358.2
(3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182175_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1653
Sequence Type Exemplar sequence
Representative Public ID B0414.8 NCBI
Target Description B0414.8 /REP_DB=WormBase Gene ID /WP=CE07738 /TR=O01839 /GB=AAB57721.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025802(9), NM_001025801(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025802 NCBI Caenorhabditis elegans B0414.8b (B0414.8) mRNA, complete cds. 9/11 None
NM_001025801 NCBI Caenorhabditis elegans B0414.8a (B0414.8) mRNA, complete cds. 10/11 None
B0414.8b ENSEMBL cdna:known chromosome:CEL140:I:5812089:5815427:-1 gene:B0414.8 9/11 None
B0414.8a ENSEMBL cdna:known chromosome:CEL140:I:5812117:5815377:-1 gene:B0414.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021246 7/11 Cross Hyb Matching Probes None
SNAP00000021232 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5812222-5815377(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0414.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT68904 Hypothetical protein B0414.8b [Caenorhabditis elegans] ref|NP_001020973.1| B0414.8b [Caenorhabditis elegans] 0.0
blast AAB57721 Hypothetical protein B0414.8a [Caenorhabditis elegans] ref|NP_001020972.1| B0414.8a [Caenorhabditis elegans] 0.0
blast CAE60455 Hypothetical protein CBG04063 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182175_S_AT
aaggatgtgctatgttggttcaaccagctgccactccaagtgctaaatttgattttagag
cttctgtacgtcgtttagtggaagagatgaacacttgtgacagtgaactgactttattgc
tcggtggagattcaaaaccaaaagattctagagtaagtcgtcgtccaatcacaactgctc
tcgatgccgccagagattcattgtggtgtgaaagaatcgattttcatctacaaattcact
tcaatcgagcttctatcatcactgtgattgtgaaggttgtgttgaagatcttcatcgaat
caattcgtttacaaacatattcgaagtttggtgtagaacaagtgcaagttgattgttatt
atttacagcgatgtttagctgctcttgtatcggatgaggttgtggtaaattcgatggttg
atcaagcattatcttccgctctgaaaagatgtcaagatccagttctcgtacatccatcta
gattggctcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGATGTGCTATGTTGGTTCAACC 187 161 1574 Antisense
TTAGAGCTTCTGTACGTCGTTTAGT 386 681 1628 Antisense
GTGAACTGACTTTATTGCTCGGTGG 54 481 1676 Antisense
GAGTAAGTCGTCGTCCAATCACAAC 13 399 1724 Antisense
CTCGATGCCGCCAGAGATTCATTGT 401 233 1753 Antisense
CAATCGAGCTTCTATCATCACTGTG 707 181 1815 Antisense
GAAGATCTTCATCGAATCAATTCGT 639 337 1857 Antisense
GTTTAGCTGCTCTTGTATCGGATGA 365 449 1946 Antisense
GATCAAGCATTATCTTCCGCTCTGA 539 421 1993 Antisense
TCAAGATCCAGTTCTCGTACATCCA 128 633 2025 Antisense
GTACATCCATCTAGATTGGCTCAAC 209 461 2041 Antisense
Sequence Source Affymetrix Proprietary Database