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[182174_at] 7TM chemoreceptor, srt family

Description C36C5.9 /REP_DB=WormBase Gene ID /WP=CE08598 /TR=O16402 /GB=AAB65936.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 20      6grp_total_sub > Hat      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 22.9
(-1.2)
A 		39
(1.1)
A 		10.9
(-3)
A 		51.6
(3)
A 		41
B 45.5
(3)
A 		5.8
(-3)
A 		8
(-2.7)
A 		31.1
(0.8)
A 		40
C 9
(-2.4)
A 		39.8
(0.5)
A 		2
(-3)
A 		66.9
(3)
A 		65
avr 25.8
(-0.4) 		28.2
(-0) 		7
(-3) 		49.9
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 3.2
(-3)
A 		14.1
(3)
A 		12.8
(2.3)
A 		6.9
(-1)
A 		6.2
(-1.3)
A 		6.1
(-1.4)
A 		11
B 18.7
(1.2)
A 		25.1
(3)
A 		11.4
(-0.9)
A 		3.9
(-3)
A 		9.2
(-1.5)
A 		7.8
(-1.9)
A 		21
C 2.7
(-3)
A 		40.8
(3)
A 		4.3
(-2.7)
A 		7.2
(-2.3)
A 		8
(-2.2)
A 		12.7
(-1.4)
A 		38
avr 8.2
(-2.4) 		26.7
(3) 		9.5
(-2) 		6
(-3) 		7.8
(-2.5) 		8.9
(-2.2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.4
(2.9)
A 		8.5
(3)
A 		2.8
(-3)
A 		7.6
(2.1)
A 		6
B 14.5
(3)
A 		1.4
(-3)
A 		1.8
(-2.8)
A 		6.6
(-0.6)
A 		13
C 3
(-1.7)
A 		11.4
(3)
A 		0.7
(-3)
A 		11.3
(2.9)
A 		11
avr 8.6
(3) 		7.1
(1.7) 		1.8
(-3) 		8.5
(2.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.6
(-3)
A 		5
(3)
A 		2.8
(-0)
A 		1.7
(-1.5)
A 		1.9
(-1.2)
A 		1.5
(-1.8)
A 		4
B 6.5
(1.5)
A 		8.3
(3)
A 		2.8
(-1.5)
A 		1
(-3)
A 		3.7
(-0.8)
A 		2.9
(-1.4)
A 		7
C 1
(-3)
A 		12.4
(3)
A 		1.1
(-2.9)
A 		1.5
(-2.7)
A 		2.6
(-2.2)
A 		4.3
(-1.3)
A 		11
avr 2.7
(-1.9) 		8.6
(3) 		2.2
(-2.3) 		1.4
(-3) 		2.7
(-1.9) 		2.9
(-1.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182174_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15288
Sequence Type Exemplar sequence
Representative Public ID C36C5.9 NCBI
Target Description C36C5.9 /REP_DB=WormBase Gene ID /WP=CE08598 /TR=O16402 /GB=AAB65936.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071464(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071464 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-72) (srt-72) mRNA, complete cds. 11/11 None
C36C5.9 ENSEMBL cdna:known chromosome:CEL140:V:3148042:3149316:-1 gene:C36C5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036655 4/11 Cross Hyb Matching Probes None
GENEFINDER00000036671 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3148041-3149316(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-72
Ensembl C36C5.9
Entrez Gene 183265 Entrez gene
SwissProt Q8ITZ4 EMBL-EBI
WormBase CE08598 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503865 Serpentine Receptor, class T family member (srt-72) [Caenorhabditis elegans] gb|AAN73879.1| Serpentine receptor, class t protein 72 [Caenorhabditis elegans] 2.0E-89
blast CAE75497 Hypothetical protein CBG23505 [Caenorhabditis briggsae] 4.0E-26
blast NP_503600 Serpentine Receptor, class T family member (srt-40) [Caenorhabditis elegans] gb|AAK84622.2| Serpentine receptor, class t protein 40 [Caenorhabditis elegans] 5.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.9E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503865.1 3 36-58,87-109,124-143
C36C5.9 3 36-58,87-109,124-143
Sequence
Target Sequence 
>C. ELEGANS:182174_AT
gaacaatatcatatcctacggatcaattgataaaattccactgtacaattgcagtaatca
cgtatccgaagagtggtcagaacttggtggaagaaaatggccggttcttgggccaatatt
gatggcttatggtattacggtcgatgttctctaccttccgatcctctccataatgtttga
aaaggaacaattcaaaacttcttgcttcaaaataataagaaaaacctacgttatactcat
gtttccaaaaaatcaagtgcttctccaatcaacattcatttgcactatcaatcagtttgg
ggcattgattgcagttctgatgaatgtaattgaagtaccaaaatggatgacaatgtcgac
tcacttcatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAATATCATATCCTACGGATCA 610 351 15 Antisense
AATTGCAGTAATCACGTATCCGAAG 93 177 61 Antisense
GCCGGTTCTTGGGCCAATATTGATG 58 285 114 Antisense
ATTGATGGCTTATGGTATTACGGTC 407 3 132 Antisense
ATTACGGTCGATGTTCTCTACCTTC 281 13 148 Antisense
TTCCGATCCTCTCCATAATGTTTGA 204 699 170 Antisense
ACCTACGTTATACTCATGTTTCCAA 562 87 238 Antisense
GCTTCTCCAATCAACATTCATTTGC 653 305 273 Antisense
TGCACTATCAATCAGTTTGGGGCAT 554 577 295 Antisense
GGGGCATTGATTGCAGTTCTGATGA 100 499 313 Antisense
TGACAATGTCGACTCACTTCATCTG 637 571 362 Antisense
Sequence Source Affymetrix Proprietary Database