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Cluster Members
Consensus/Exemplar

GeneChip Array Information

Probe Set ID

182173_at

GeneChip Array

C. elegans Genome Array

Organism Common Name

Nematode

Probe Design Information

Transcript ID(Array Design)

affy.Ce.6027

Sequence Type

Exemplar sequence

Representative Public ID

F45G2.10 NCBI

Target Description

F45G2.10 /REP_DB=WormBase Gene ID /WP=CE16053 /TR=O62252 /GB=CAB07619.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation

Annotation Method Description

Annotation Description

This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).

Annotation Grade

This is a grade A annotation.

Annotation Transcript Cluster (# of Matching Probes)

NM_067376(11)

Transcript Assignments

Representative Transcript	Description	Matching Probes	Related Probesets by Grade
NM_067376 NCBI	Caenorhabditis elegans F45G2.10 (F45G2.10) mRNA, complete cds.	11/11	None
GENEFINDER00000011680 ENSEMBL	cdna:GeneFinder chromosome:CEL140:III:13435303:13442033:-1	10/11	None
SNAP00000011675 ENSEMBL	cdna:SNAP chromosome:CEL140:III:13436653:13439041:-1	11/11	None
F45G2.10 ENSEMBL	cdna:known chromosome:CEL140:III:13436653:13439041:-1 gene:F45G2.10	11/11	None

Annotation Notes

There are no noteworthy cross hybridizing mRNAs found for this probe set.

Genomic Alignment of Consensus/Exemplar Sequence

Assembly

Wormbase March 2004

Alignment(s)

Position	Identity	Coverage	Cytoband
chrIII:13436648-13439037(-)	100.0	100.0

Public Domain and Genome References

Gene Title

Ensembl

F45G2.10

Entrez Gene

185814 Entrez gene

SwissProt

O62252 EMBL-EBI

WormBase

CE16053 Wormbase

Functional Annotations

Ortholog

ID	Title	Organism
CANINE:1602786_AT	similar to Hypothetical UPF0195 protein CGI-128	cfa
CANINE_2:CFA.14385.1.S1_S_AT	similar to Hypothetical UPF0195 protein CGI-128	cfa
CANINE_2:CFA.14385.2.S1_S_AT	similar to Hypothetical UPF0195 protein CGI-128	cfa
CANINE_2:CFA.14385.2.S1_X_AT	similar to Hypothetical UPF0195 protein CGI-128	cfa
CANINE_2:CFAAFFX.31224.1.S1_AT	similar to Hypothetical UPF0195 protein CGI-128	cfa
CANINE_2:CFAAFFX.31224.1.S1_S_AT	similar to Hypothetical UPF0195 protein CGI-128	cfa
DROSOPHILA_2:1633886_AT		dm
DROSGENOME1:148536_AT		dm
CHICKEN:GGA.1871.1.S1_AT	similar to Hypothetical UPF0195 protein CGI-128 homolog	gga
HG-U133_PLUS_2:218074_AT	family with sequence similarity 96, member B	hs
HG-U133A:218074_AT	family with sequence similarity 96, member B	hs
HG-U133A_2:218074_AT	family with sequence similarity 96, member B	hs
HU35KSUBA:RC_AA490522_AT	family with sequence similarity 96, member B	hs
U133_X3P:G7706342_3P_AT	family with sequence similarity 96, member B	hs
HG-U95B:46717_AT	family with sequence similarity 96, member B	hs
MOE430A:1428874_AT	RIKEN cDNA 1110019N10 gene	mm
MOUSE430A_2:1428874_AT	RIKEN cDNA 1110019N10 gene	mm
MOUSE430_2:1428874_AT	RIKEN cDNA 1110019N10 gene	mm
MU11KSUBA:AA407142_RC_S_AT	RIKEN cDNA 1110019N10 gene	mm
MG-U74AV2:95592_AT	RIKEN cDNA 1110019N10 gene	mm
MG-U74AV2:162471_I_AT	RIKEN cDNA 1110019N10 gene	mm
MG-U74CV2:169506_R_AT	RIKEN cDNA 1110019N10 gene	mm

Protein Similarities

Method	ID	Description	E-Value
blast	CAA21773	Hypothetical protein Y76A2A.2 [Caenorhabditis elegans] emb\|CAB07620.2\| Hypothetical protein Y76A2A.2 [Caenorhabditis elegans] ref\|NP_499778.1\| CU (copper) ATPase family member (cua-1) [Caenorhabditis elegans] dbj\|BAA20550.1\| copper transporting ATPase [Caenorhabditis elegans]	0.0
blast	CAE73686	Hypothetical protein CBG21197 [Caenorhabditis briggsae]	1.0E-168
blast	AAB62695	P-type ATPase [Caenorhabditis elegans]	1.0E-167
blast	CAB07619	Hypothetical protein F45G2.10 [Caenorhabditis elegans] ref\|NP_499777.1\| F45G2.10 [Caenorhabditis elegans] sp\|O62252\|U195_CAEEL Hypothetical UPF0195 protein F45G2.10 in chromosome III	1.0E-87
blast	CAE73694	Hypothetical protein CBG21205 [Caenorhabditis briggsae]	9.0E-87
blast	AAH76022	Zgc:92345 [Danio rerio] ref\|XP_686385.1\| PREDICTED: similar to Hypothetical UPF0195 protein CGI-128 homolog isoform 1 [Danio rerio] ref\|NP_001002449.1\| hypothetical protein LOC436722 [Danio rerio]	2.0E-47

Protein Domains

Database	ID	Description	E-Value
Pfam	IPR002744 EMBL-EBI	Protein of unknown function DUF59	3.7E-31
Pfam	IPR005834 EMBL-EBI	Haloacid dehalogenase-like hydrolase	3.5E-21
Pfam	IPR002744 EMBL-EBI	Protein of unknown function DUF59	2.9E-13
Pfam	IPR002744 EMBL-EBI	Protein of unknown function DUF59	1.9E-11
Pfam	IPR002877 EMBL-EBI	Ribosomal RNA methyltransferase RrmJ/FtsJ	1.7E-80

Trans Membrane
ID	Number Of Domains	Domain Boundaries
GENEFINDER00000011680	1	255-277

Sequence

Target Sequence

>C. ELEGANS:182173_AT
atgggccaagaacgtctcgacaatgcaaatccaacacttttcgactcaaaaccacgtcat
cgacctgttactggcactgaaagagatgaaagcgtcgaagatccaatcgattcgtgggag
attttcgatctgatcagagatatcaacgatccagagcatccatatactctcgagcagtta
aatgtggttcaagaggagcttatcaaagtgtttatcgacgaagaagagacctttgtgaag
gtgaatttcacaccaaccattccacactgcagtatggcaacactaatcggtttggcgatt
cgagtgaaacttttgagatctttgcatccgaaagttaaagttagcgtttcaatcactcca
ggatcacattctacggaagaatcaattaacaggcagttggccgacaaggaacgagtagct
gctgcaa

BLASTn GenBank NR

Probe Info

Probe Sequence(5'-3')	Probe X	Probe Y	Probe Interrogation Position	Strandedness
ATGGGCCAAGAACGTCTCGACAATG	356	49	13	Antisense
GCAAATCCAACACTTTTCGACTCAA	463	317	37	Antisense
CGACTCAAAACCACGTCATCGACCT	164	249	54	Antisense
TCATCGACCTGTTACTGGCACTGAA	269	621	69	Antisense
GAGCATCCATATACTCTCGAGCAGT	355	389	166	Antisense
GTGAATTTCACACCAACCATTCCAC	631	481	253	Antisense
ATTCCACACTGCAGTATGGCAACAC	640	7	271	Antisense
ATGGCAACACTAATCGGTTTGGCGA	596	51	286	Antisense
AGTTAGCGTTTCAATCACTCCAGGA	150	63	351	Antisense
CACTCCAGGATCACATTCTACGGAA	220	199	366	Antisense
GACAAGGAACGAGTAGCTGCTGCAA	69	365	415	Antisense

Sequence Source

Affymetrix Proprietary Database

Description	F45G2.10 /REP_DB=WormBase Gene ID /WP=CE16053 /TR=O62252 /GB=CAB07619.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster	6grp_highest_10_10 > 58 6grp_high1_10_10 > 84 4grp_highest_8_8 > 15 4grp_high_8_8 > 14 6grp_highest_nonorm > 85 6grp_total > 75 4grp_total > 10 4grp_rule_based > L4