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[182172_at]

Description B0344.2 /REP_DB=WormBase Gene ID /WP=CE17325 /TR=O61737 /GB=AAC16982.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 49      6grp_cgc > 97      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 11.4
(-2.9)
A 		140.5
(2.2)
P 		160.6
(3)
P 		8
(-3)
A 		153
B 8.5
(-3)
A 		163.9
(3)
P 		121
(1.3)
P 		27.8
(-2.3)
A 		155
C 6.2
(-2.9)
A 		207
(3)
P 		146.7
(1.2)
P 		2.3
(-3)
A 		205
avr 8.7
(-3) 		170.5
(3) 		142.8
(2) 		12.7
(-2.9) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 25.9
(-2.1)
A 		69.9
(0.5)
P 		62.2
(0)
M 		112.8
(3)
P 		102.6
(2.4)
P 		11.1
(-3)
A 		102
B 42.2
(-2.1)
A 		83.7
(0.5)
P 		28.3
(-3)
A 		122.8
(3)
P 		89.1
(0.9)
P 		28.1
(-3)
P 		95
C 21.9
(-3)
A 		80.3
(-0.3)
P 		61.6
(-1.2)
A 		77.2
(-0.4)
P 		150.7
(3)
P 		38.9
(-2.2)
A 		129
avr 30
(-2.7) 		78
(0.5) 		50.7
(-1.3) 		104.3
(2.3) 		114.1
(3) 		26
(-3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 4.2
(-2.6)
A 		30.5
(1.3)
P 		42
(3)
P 		1.2
(-3)
A 		41
B 2.7
(-3)
A 		40.5
(3)
P 		28
(1)
P 		5.9
(-2.5)
A 		38
C 2
(-2.8)
A 		59.5
(3)
P 		51.1
(2.1)
P 		0.4
(-3)
A 		59
avr 3
(-2.9) 		43.5
(3) 		40.4
(2.5) 		2.5
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 4.8
(-2.6)
A 		24.9
(1.7)
P 		13.5
(-0.7)
M 		28.6
(2.5)
P 		30.9
(3)
P 		2.7
(-3)
A 		28
B 14.7
(-1.4)
A 		27.9
(1.3)
P 		6.9
(-3)
A 		32.5
(2.2)
P 		36.2
(3)
P 		10.5
(-2.3)
P 		29
C 8.1
(-3)
A 		24.5
(-0.6)
P 		15.7
(-1.9)
A 		15.5
(-1.9)
P 		48.8
(3)
P 		13
(-2.3)
A 		41
avr 9.2
(-2.9) 		25.8
(0.4) 		12
(-2.3) 		25.5
(0.4) 		38.6
(3) 		8.7
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182172_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18196
Sequence Type Exemplar sequence
Representative Public ID B0344.2 NCBI
Target Description B0344.2 /REP_DB=WormBase Gene ID /WP=CE17325 /TR=O61737 /GB=AAC16982.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075897(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075897 NCBI Caenorhabditis elegans WaRThog (hedgehog-like family) family member (wrt-9) (wrt-9) mRNA, complete cds. 11/11 None
GENEFINDER00000005940 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1576633:1590890:1 11/11 None
SNAP00000005922 ENSEMBL cdna:SNAP chromosome:CEL140:X:1587530:1590890:1 11/11 None
B0344.2 ENSEMBL cdna:known chromosome:CEL140:X:1576633:1590890:1 gene:B0344.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1583250-1590890(+) 96.14 100.0
Public Domain and Genome References
Gene Title
Gene Symbol wrt-9
Ensembl B0344.2
Entrez Gene 181931 Entrez gene
SwissProt O61737 EMBL-EBI
WormBase CE33963 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC16982 Warthog (hedgehog-like family) protein 9 [Caenorhabditis elegans] ref|NP_508298.2| WaRThog (hedgehog-like family) family member (wrt-9) [Caenorhabditis elegans] 0.0
blast CAE70009 Hypothetical protein CBG16423 [Caenorhabditis briggsae] 1.0E-160
blast AAC16982 Warthog (hedgehog-like family) protein 9 [Caenorhabditis elegans] ref|NP_508298.2| WaRThog (hedgehog-like family) family member (wrt-9) [Caenorhabditis elegans] 4.0E-63
blast CAE70009 Hypothetical protein CBG16423 [Caenorhabditis briggsae] 6.0E-46
blast T33371 hypothetical protein H02F09.1 - Caenorhabditis elegans 5.0E-41
Sequence
Target Sequence 
>C. ELEGANS:182172_AT
actaccccaacatcaacatcagtttggattcttccagccaccaccacagccgcagcctca
aattttcggagggtacgggttgaataatggaggcggctaccaacagccatcttatgggct
ccaaggagttcagactgtacaacaaaatcagttacctgaaatggatgtctatacgaggtc
gttacttaccaatccaaatagtccatttgccttgcaattgccgacttttggagccgcacc
accggctccgcagtttttcgcgccgcagcaacagattcaggaccaacagaagaacctcca
acgagtgaacatccaagccccccaacgtgaacaatccaaccagcccgcccaactgatgct
ccaaccgcagccggatccaaaccaagctccaaaccacgatacccttggagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACCCCAACATCAACATCAGTTT 234 101 1113 Antisense
CATCAGTTTGGATTCTTCCAGCCAC 707 211 1129 Antisense
CACAGCCGCAGCCTCAAATTTTCGG 604 195 1157 Antisense
AATGGAGGCGGCTACCAACAGCCAT 73 163 1198 Antisense
AACAGCCATCTTATGGGCTCCAAGG 582 135 1214 Antisense
TACGAGGTCGTTACTTACCAATCCA 282 649 1284 Antisense
GTCCATTTGCCTTGCAATTGCCGAC 643 475 1313 Antisense
GCGCCGCAGCAACAGATTCAGGACC 206 287 1372 Antisense
GACCAACAGAAGAACCTCCAACGAG 159 381 1393 Antisense
CTCCAACGAGTGAACATCCAAGCCC 48 237 1408 Antisense
TCCAAACCACGATACCCTTGGAGCC 705 585 1500 Antisense
Sequence Source Affymetrix Proprietary Database