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[182171_at] 7TM chemoreceptor, srz family

Description F56D6.6 /REP_DB=WormBase Gene ID /WP=CE17910 /TR=O61836 /GB=AAC17550.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 48      6grp_total_sub > Hat      6grp_cgc > 63      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2
(-3)
A 		6.4
(-0.3)
A 		11.8
(3)
A 		4
(-1.8)
A 		10
B 2.3
(-2.8)
A 		5.2
(3)
A 		2.2
(-3)
A 		2.5
(-2.4)
A 		3
C 4.1
(3)
A 		3.7
(0.8)
A 		3
(-3)
A 		3.9
(1.9)
A 		1
avr 2.8
(-3) 		5.1
(1.8) 		5.7
(3) 		3.5
(-1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2.8
(-2.5)
A 		8.3
(3)
A 		2.7
(-2.6)
A 		2.3
(-3)
A 		2.7
(-2.6)
A 		3.1
(-2.2)
A 		6
B 2.4
(-3)
A 		2.7
(-2.5)
A 		2.8
(-2.3)
A 		4.7
(1.2)
A 		5.7
(3)
A 		2.6
(-2.6)
A 		3
C 2.3
(-1.7)
A 		4.8
(3)
A 		2.8
(-0.8)
A 		3.7
(0.9)
A 		2
(-2.3)
A 		1.6
(-3)
A 		3
avr 2.5
(-2.8) 		5.3
(3) 		2.8
(-2.2) 		3.6
(-0.5) 		3.5
(-0.7) 		2.4
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.7
(-2.8)
A 		1.4
(-1.1)
A 		3.1
(3)
A 		0.6
(-3)
A 		3
B 0.7
(-1.5)
A 		1.3
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1
C 1.4
(3)
A 		1.1
(0.4)
A 		1
(-0.4)
A 		0.7
(-3)
A 		1
avr 0.9
(-1) 		1.3
(1.7) 		1.5
(3) 		0.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.5
(-3)
A 		3
(3)
A 		0.6
(-2.8)
A 		0.6
(-2.8)
A 		0.8
(-2.3)
A 		0.7
(-2.5)
A 		3
B 0.8
(-2.6)
A 		0.9
(-2.3)
A 		0.7
(-3)
A 		1.2
(-1.1)
A 		2.3
(3)
A 		1
(-1.9)
A 		2
C 0.9
(-0.6)
A 		1.5
(3)
A 		0.7
(-1.8)
A 		0.8
(-1.2)
A 		0.6
(-2.4)
A 		0.5
(-3)
A 		1
avr 0.7
(-3) 		1.8
(3) 		0.7
(-3) 		0.9
(-1.9) 		1.2
(-0.3) 		0.7
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182171_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10375
Sequence Type Exemplar sequence
Representative Public ID F56D6.6 NCBI
Target Description F56D6.6 /REP_DB=WormBase Gene ID /WP=CE17910 /TR=O61836 /GB=AAC17550.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068033 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-62) (srz-62) mRNA, complete cds. 11/11 None
F56D6.6 ENSEMBL cdna:known chromosome:CEL140:IV:3903195:3905557:1 gene:F56D6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037029 2/11 Cross Hyb Matching Probes None
SNAP00000037030 7/11 Cross Hyb Matching Probes None
GENEFINDER00000037052 2/11 Cross Hyb Matching Probes None
GENEFINDER00000037053 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3903200-3905563(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srz family
Ensembl F56D6.6
Entrez Gene 186390 Entrez gene
SwissProt Q8ITX7 EMBL-EBI
WormBase CE17910 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN73864 Hypothetical protein F56D6.6 [Caenorhabditis elegans] ref|NP_500434.1| Serpentine Receptor, class Z family member (srz-62) [Caenorhabditis elegans] 1.0E-119
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500434.1 3 15-34,85-107,194-216
F56D6.6 3 15-34,85-107,194-216
Sequence
Target Sequence 
>C. ELEGANS:182171_AT
aagtttctcggaggccattctatcctttggagttgtctggatagtgcaaatcatgatgat
tatcccacagctcgtctgtctctcaatgatattcatccttgaaacgtcgcaagctcctga
tgcagccgccttgcagaagacattcaacaacagcagtgcacaaatgaaagcaaacttcga
caagaatgcagcagagagtaaggaaaattttgagaagaaaaaagatgaaatggagaaaga
tttcaataaaacaaaggaggaaaatgaaaaaaaagcgaaagaggataagaagaaagcgga
aggtttcatcgaatctatcctggcattcggagttggtacgattgtgttgaccgttcttct
gtgcgtcggaggttctttggctgcaggccttgtcacgtatttcattattcgcggacgcaa
gagggacaaggagattgaggcagaaatcgttgccgcgtctacaatgggaacagttggagc
ggctaccaccgatcacaatatttcaggtttttcctgtgccaaggtggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTTCTCGGAGGCCATTCTATCC 52 157 252 Antisense
GGCCATTCTATCCTTTGGAGTTGTC 594 541 264 Antisense
GTCTGTCTCTCAATGATATTCATCC 621 471 325 Antisense
TTGAAACGTCGCAAGCTCCTGATGC 194 703 350 Antisense
GAATCTATCCTGGCATTCGGAGTTG 66 329 562 Antisense
ACGATTGTGTTGACCGTTCTTCTGT 8 95 589 Antisense
CAGGCCTTGTCACGTATTTCATTAT 602 207 635 Antisense
TCGTTGCCGCGTCTACAATGGGAAC 77 605 698 Antisense
AACAGTTGGAGCGGCTACCACCGAT 296 137 720 Antisense
GGCTACCACCGATCACAATATTTCA 96 539 732 Antisense
GGTTTTTCCTGTGCCAAGGTGGATC 473 505 757 Antisense
Sequence Source Affymetrix Proprietary Database