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[182170_at]

Description C14E2.1 /REP_DB=WormBase Gene ID /WP=CE06828 /TR=Q17987 /GB=AAA85751.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 0      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 10
(-2.7)
A 		6.4
(-3)
A 		34.5
(-1)
A 		92.2
(3)
P 		86
B 20.6
(-3)
A 		39.8
(0.8)
A 		51
(3)
P 		47.6
(2.3)
P 		30
C 51.7
(3)
A 		6
(-3)
A 		39.6
(1.4)
A 		46.3
(2.3)
A 		46
avr 27.4
(-1.7) 		17.4
(-3) 		41.7
(0.3) 		62
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 96
(3)
M 		7
(-3)
A 		19.5
(-2.2)
A 		23.7
(-1.9)
A 		25.3
(-1.8)
A 		45.6
(-0.4)
A 		89
B 27.3
(0)
A 		49.2
(3)
A 		5.1
(-3)
A 		18.5
(-1.2)
A 		24.2
(-0.4)
A 		33.6
(0.9)
A 		44
C 46.4
(-0.6)
A 		59.7
(2.4)
P 		35.8
(-3)
A 		62.2
(3)
A 		49.4
(0.1)
A 		35.7
(-3)
A 		27
avr 56.6
(3) 		38.6
(0) 		20.1
(-3) 		34.8
(-0.6) 		33
(-0.9) 		38.3
(-0) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.6
(-1.9)
A 		1.4
(-3)
A 		9
(0.8)
A 		13.5
(3)
P 		12
B 6.6
(-3)
A 		9.8
(0.7)
A 		11.8
(3)
P 		10.1
(1)
P 		5
C 17.1
(3)
A 		1.7
(-3)
A 		13.8
(1.7)
A 		7.8
(-0.6)
A 		15
avr 9.1
(1) 		4.3
(-3) 		11.5
(3) 		10.5
(2.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 17.7
(3)
M 		2.5
(-3)
A 		4.3
(-2.3)
A 		6
(-1.6)
A 		7.6
(-1)
A 		11.1
(0.4)
A 		15
B 9.5
(0.3)
A 		16.4
(3)
A 		1.2
(-3)
A 		4.9
(-1.5)
A 		9.8
(0.4)
A 		12.5
(1.5)
A 		15
C 17.2
(2.3)
A 		18.2
(3)
P 		9.1
(-3)
A 		12.5
(-0.8)
A 		16
(1.5)
A 		12
(-1.1)
A 		9
avr 14.8
(3) 		12.4
(1.5) 		4.9
(-3) 		7.8
(-1.2) 		11.1
(0.8) 		11.9
(1.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182170_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18192
Sequence Type Exemplar sequence
Representative Public ID C14E2.1 NCBI
Target Description C14E2.1 /REP_DB=WormBase Gene ID /WP=CE06828 /TR=Q17987 /GB=AAA85751.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075934(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075934 NCBI Caenorhabditis elegans C14E2.1 (C14E2.1) mRNA, complete cds. 11/11 None
SNAP00000021827 ENSEMBL cdna:SNAP chromosome:CEL140:X:1826460:1827348:1 11/11 None
GENEFINDER00000021836 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1826460:1827348:1 11/11 None
C14E2.1 ENSEMBL cdna:known chromosome:CEL140:X:1826460:1827348:1 gene:C14E2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1826459-1827348(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14E2.1
Entrez Gene 182613 Entrez gene
SwissProt Q17987 EMBL-EBI
WormBase CE35396 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA85751 Hypothetical protein C14E2.1 [Caenorhabditis elegans] ref|NP_508335.2| C14E2.1 [Caenorhabditis elegans] 2.0E-72
blast AAA85751 Hypothetical protein C14E2.1 [Caenorhabditis elegans] ref|NP_508335.2| C14E2.1 [Caenorhabditis elegans] 2.0E-53
Sequence
Target Sequence 
>C. ELEGANS:182170_AT
aatggctctacaaccgcaggatagtgaaaaattggaaagcacagacaagacagaagaagt
aaatcacaactatcaggaaactgcccgtgaatgtgaaaattccgccgagagactgaatat
gaagatgctcaatgaaaacatgaagcaaggaatgccagttatttgggaaaaaagtattac
ctctacagaataccccgtcgaagacgaaagcagtgacaattccgaagacacacaggaaat
ccttttgccttcggtgggagattctcctaccaaaacctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGCTCTACAACCGCAGGATAGT 130 161 30 Antisense
AAATCACAACTATCAGGAAACTGCC 407 117 90 Antisense
GGAAACTGCCCGTGAATGTGAAAAT 100 527 105 Antisense
GTGAAAATTCCGCCGAGAGACTGAA 2 481 122 Antisense
GAAGCAAGGAATGCCAGTTATTTGG 707 339 171 Antisense
GTATTACCTCTACAGAATACCCCGT 265 303 203 Antisense
CTACAGAATACCCCGTCGAAGACGA 191 227 212 Antisense
GCAGTGACAATTCCGAAGACACACA 532 311 239 Antisense
CACAGGAAATCCTTTTGCCTTCGGT 703 195 260 Antisense
TTTTGCCTTCGGTGGGAGATTCTCC 370 659 272 Antisense
TGGGAGATTCTCCTACCAAAACCTG 174 553 284 Antisense
Sequence Source Affymetrix Proprietary Database