[Home] | [Total List]

[182169_at]

Description F47G6.2 /REP_DB=WormBase Gene ID /WP=CE28399 /TR=Q9TZI7 /GB=AAK18953.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_high_8_8 > 30      6grp_highest_nonorm > 71      6grp_total > 82      4grp_total > 25      6grp_highest_sub > 04_05      6grp_high1_sub > 02_03_04_05      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 349
1 2 3 4 range
A 208.4
(-3)
M 		393
(2.5)
P 		285.3
(-0.7)
P 		408.1
(3)
P 		200
B 152.6
(-3)
P 		287.8
(-0.7)
P 		287.8
(-0.7)
P 		501.4
(3)
P 		349
C 201
(-3)
M 		331.1
(0.9)
A 		310.1
(0.3)
P 		400.9
(3)
P 		200
avr 187.3
(-3) 		337.3
(0.6) 		294.4
(-0.4) 		436.8
(3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 256.7
(-0.1)
P 		330.8
(1.6)
P 		353.4
(2.2)
P 		309
(1.1)
P 		390.2
(3)
P 		128.7
(-3)
P 		262
B 220
(-1.4)
P 		324
(0.5)
P 		287.9
(-0.2)
P 		450.2
(2.9)
P 		458.2
(3)
P 		136.3
(-3)
P 		322
C 204.7
(-1.4)
P 		292.8
(0.4)
P 		349.8
(1.5)
P 		398.8
(2.5)
P 		420.9
(3)
P 		129.1
(-3)
P 		292
avr 227.1
(-1) 		315.9
(0.8) 		330.4
(1.1) 		386
(2.2) 		423.1
(3) 		131.4
(-3) 		292
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 75.9
(0.8)
M 		85.3
(3)
P 		74.6
(0.5)
P 		59.7
(-3)
P 		26
B 48.7
(-3)
P 		71.1
(-0.7)
P 		66.7
(-1.1)
P 		106.8
(3)
P 		58
C 66.5
(-3)
M 		95.2
(1.1)
A 		108.1
(3)
P 		67.6
(-2.8)
P 		42
avr 63.7
(-3) 		83.9
(3) 		83.1
(2.8) 		78
(1.2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 47.3
(-1.9)
P 		117.6
(3)
P 		77
(0.2)
P 		78.4
(0.3)
P 		117.7
(3)
P 		31.3
(-3)
P 		86
B 76.5
(-1.9)
P 		107.8
(-0.5)
P 		69.9
(-2.2)
P 		119.2
(0)
P 		186.1
(3)
P 		50.8
(-3)
P 		135
C 75.9
(-0.9)
P 		89.3
(-0)
P 		89
(-0)
P 		80.2
(-0.6)
P 		136.2
(3)
P 		43.2
(-3)
P 		93
avr 66.6
(-1.6) 		104.9
(0.6) 		78.6
(-0.9) 		92.6
(-0.1) 		146.7
(3) 		41.8
(-3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182169_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.263
Sequence Type Exemplar sequence
Representative Public ID F47G6.2 NCBI
Target Description F47G6.2 /REP_DB=WormBase Gene ID /WP=CE28399 /TR=Q9TZI7 /GB=AAK18953.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058458 NCBI Caenorhabditis elegans F47G6.2 (F47G6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000020138 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1465633:1479861:1 11/11 None
SNAP00000020131 ENSEMBL cdna:SNAP chromosome:CEL140:I:1478795:1479861:1 9/11 None
F47G6.2 ENSEMBL cdna:known chromosome:CEL140:I:1471298:1479863:1 gene:F47G6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1475626-1479861(+) 99.46 100.0
Public Domain and Genome References
Gene Title
Ensembl F47G6.2
Entrez Gene 171714 Entrez gene
SwissProt Q9TZI7 EMBL-EBI
WormBase CE28399 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18953 Hypothetical protein F47G6.2 [Caenorhabditis elegans] ref|NP_490859.1| F47G6.2 [Caenorhabditis elegans] 0.0
blast CAE74530 Hypothetical protein CBG22284 [Caenorhabditis briggsae] 0.0
blast T33511 hypothetical protein F47G6.2 - Caenorhabditis elegans 0.0
blast AAK18953 Hypothetical protein F47G6.2 [Caenorhabditis elegans] ref|NP_490859.1| F47G6.2 [Caenorhabditis elegans] 1.0E-107
Protein Families
Method ID Description E-Value
ec 4CL1_ARATH (Q42524) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) 4.0E-97
ec 4CL1_ARATH (Q42524) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) 3.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 1.6E-34
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 1.6E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000020138 1 216-238
Sequence
Target Sequence 
>C. ELEGANS:182169_AT
tattgcggttgggtacctactcaccgagaccggatccatcccacttatgggagatcaaaa
ttcagatttcactcgaaacgtgggaaaagccattgccggctatgaagcccatctgattcc
actggacggaagtgaaaatcaagtagaaaccggaaaattgggaaaactgttgattcgagt
ctactatggatcgacgttcatgggatatgcacctgatacgaaaggaaaagagaaatgggt
cgatactggagacatcggtcgaatggacgaaaacggagcgatcgaggtggtggcaagcga
ggatgatctgatatatgacaagaataattgtctagtcgaacactggaatttggaacgtct
cctgaatcagaatgatttgataaaaggggttcaagtggtgtcacgtggtagaggacaacc
ggtcacggcagtttgtgtcgccagaagtacacaatttcatgcggcaaagctgaaggatga
gctgaagagcatgtgtcgttcacatcattttgtcgctcccgacgtgttcgcctttgtcga
tgatttcccgagagtgcacacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGCGGTTGGGTACCTACTCACC 125 665 1050 Antisense
ACCGGATCCATCCCACTTATGGGAG 123 89 1078 Antisense
GCCATTGCCGGCTATGAAGCCCATC 352 281 1138 Antisense
TATGAAGCCCATCTGATTCCACTGG 258 655 1150 Antisense
GGAGCGATCGAGGTGGTGGCAAGCG 562 519 1324 Antisense
GAATTTGGAACGTCTCCTGAATCAG 503 325 1395 Antisense
GGGGTTCAAGTGGTGTCACGTGGTA 641 497 1435 Antisense
ACAACCGGTCACGGCAGTTTGTGTC 456 111 1464 Antisense
TGTGTCGTTCACATCATTTTGTCGC 233 555 1541 Antisense
GTGTTCGCCTTTGTCGATGATTTCC 305 485 1573 Antisense
GATGATTTCCCGAGAGTGCACACGA 631 409 1588 Antisense
Sequence Source Affymetrix Proprietary Database