[Home] | [Total List]

[182168_at]

Description F21E9.6 /REP_DB=WormBase Gene ID /WP=CE17690 /TR=O16590 /GB=AAC70881.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 13.9
(-3)
A 		57.3
(0.4)
A 		38.9
(-1)
A 		90.7
(3)
A 		77
B 43.1
(0.8)
A 		55.3
(3)
A 		30.8
(-1.5)
A 		22.4
(-3)
A 		33
C 24.4
(-3)
A 		32.4
(-1.5)
A 		34.1
(-1.2)
A 		56.6
(3)
A 		32
avr 27.1
(-3) 		48.3
(1.3) 		34.6
(-1.5) 		56.6
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 83.7
(3)
A 		31.3
(-1)
A 		5
(-3)
A 		4.9
(-3)
A 		27.7
(-1.3)
A 		10.2
(-2.6)
A 		79
B 41.5
(0.8)
A 		59.9
(3)
A 		10
(-3)
A 		19.3
(-1.9)
A 		34.8
(-0)
A 		23.5
(-1.4)
A 		50
C 32.2
(-0.2)
A 		55.6
(3)
A 		39.9
(0.8)
A 		11.9
(-3)
A 		44.7
(1.5)
A 		31.1
(-0.4)
A 		44
avr 52.5
(3) 		48.9
(2.5) 		18.3
(-2.1) 		12
(-3) 		35.7
(0.5) 		21.6
(-1.6) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5
(-3)
A 		12.4
(2.3)
A 		10.2
(0.8)
A 		13.3
(3)
A 		8
B 13.7
(3)
A 		13.7
(3)
A 		7.1
(-1.4)
A 		4.8
(-3)
A 		9
C 8.1
(-3)
A 		9.3
(-1.1)
A 		11.9
(3)
A 		9.5
(-0.8)
A 		4
avr 8.9
(-3) 		11.8
(3) 		9.7
(-1.3) 		9.2
(-2.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 15.4
(3)
A 		11.1
(1.2)
A 		1.1
(-3)
A 		1.2
(-3)
A 		8.3
(0)
A 		2.5
(-2.4)
A 		14
B 14.4
(1.1)
A 		19.9
(3)
A 		2.4
(-3)
A 		5.1
(-2.1)
A 		14.1
(1)
A 		8.8
(-0.8)
A 		18
C 11.9
(0.9)
A 		17
(3)
A 		10.2
(0.2)
A 		2.4
(-3)
A 		14.5
(2)
A 		10.4
(0.3)
A 		15
avr 13.9
(2) 		16
(3) 		4.6
(-2.2) 		2.9
(-3) 		12.3
(1.3) 		7.2
(-1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182168_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18188
Sequence Type Exemplar sequence
Representative Public ID F21E9.6 NCBI
Target Description F21E9.6 /REP_DB=WormBase Gene ID /WP=CE17690 /TR=O16590 /GB=AAC70881.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075848(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075848 NCBI Caenorhabditis elegans F21E9.6 (F21E9.6) mRNA, complete cds. 11/11 None
F21E9.6 ENSEMBL cdna:known chromosome:CEL140:X:1355551:1356477:-1 gene:F21E9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017313 4/11 Cross Hyb Matching Probes None
SNAP00000017300 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1355550-1356477(-) 96.87 100.0
Public Domain and Genome References
Gene Title
Ensembl F21E9.6
Entrez Gene 184784 Entrez gene
SwissProt O16590 EMBL-EBI
WormBase CE17690 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC70881 Hypothetical protein F21E9.6 [Caenorhabditis elegans] ref|NP_508249.1| F21E9.6 [Caenorhabditis elegans] 1.0E-67
Sequence
Target Sequence 
>C. ELEGANS:182168_AT
tgaaatttcatctactcttcctcacattcttgtcgctcattgtgagcggtcgcctcacaa
gcaaccgcggagagctcccaaccacgatcaatgagaccgtcgatgccgcttctcgtagat
caacgaatgcaacagaaccgcttccgatgactctaatcaccaggaggtctatagtaattt
atctaaacacgactgataattcagactctactccctttatcaatgactctaacatagcca
tcttgaatcccgagtttgaaaatcttacaaactcctctggctcagcctctccgacgacat
ccgcgattcctgccacttcaacactatcccccgggtccactgaaatttccatctcagagc
tcccgacaacagcctcaccaagtgaaactcatttgatatccacattcgaagaatcgattc
tttcttccagcacaatcctgtcccccagctcaaccgaagctttcacctcagagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAATTTCATCTACTCTTCCTCAC 213 573 14 Antisense
CCTCACAAGCAACCGCGGAGAGCTC 653 267 66 Antisense
ATCAATGAGACCGTCGATGCCGCTT 324 27 100 Antisense
AACGAATGCAACAGAACCGCTTCCG 583 143 135 Antisense
CTTCCGATGACTCTAATCACCAGGA 489 219 154 Antisense
ACTCTACTCCCTTTATCAATGACTC 110 101 218 Antisense
AACATAGCCATCTTGAATCCCGAGT 156 139 244 Antisense
AAAATCTTACAAACTCCTCTGGCTC 350 133 272 Antisense
TGAAATTTCCATCTCAGAGCTCCCG 421 571 354 Antisense
AAGAATCGATTCTTTCTTCCAGCAC 35 153 422 Antisense
CAACCGAAGCTTTCACCTCAGAGCT 453 187 464 Antisense
Sequence Source Affymetrix Proprietary Database