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[182167_at]

Description ZC308.1 /REP_DB=WormBase Gene ID /WP=CE15159 /TR=O17088 /GB=AAB70341.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 81      6grp_total > 37      4grp_total > 46      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 484.6
(3)
P 		359.6
(-3)
P 		397.7
(-1.2)
P 		364.9
(-2.7)
P 		125
B 522.5
(3)
P 		393.7
(-2)
P 		367.6
(-3)
P 		462
(0.7)
P 		155
C 524.6
(3)
P 		467.4
(1.1)
P 		392.6
(-1.4)
P 		346.5
(-3)
P 		178
avr 510.6
(3) 		406.9
(-2) 		386
(-3) 		391.1
(-2.8) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 268.1
(-1)
P 		390.3
(2.9)
P 		207.5
(-3)
P 		307.6
(0.2)
P 		224.4
(-2.5)
P 		392.9
(3)
P 		185
B 232.6
(-0.8)
P 		284.9
(3)
P 		231.9
(-0.8)
P 		225.7
(-1.3)
P 		201.7
(-3)
P 		252.9
(0.7)
P 		83
C 494.7
(3)
P 		220.5
(-3)
P 		348.4
(-0.2)
P 		245.1
(-2.5)
P 		317.6
(-0.9)
P 		303.6
(-1.2)
P 		274
avr 331.8
(3) 		298.6
(0.6) 		262.6
(-1.9) 		259.5
(-2.2) 		247.9
(-3) 		316.5
(1.9) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 176.5
(3)
P 		78.1
(-1.8)
P 		104
(-0.5)
P 		53.4
(-3)
P 		123
B 166.6
(3)
P 		97.2
(-2.1)
P 		85.2
(-3)
P 		98.4
(-2)
P 		81
C 173.7
(3)
P 		134.4
(1)
P 		136.8
(1.1)
P 		58.4
(-3)
P 		115
avr 172.3
(3) 		103.2
(-1.1) 		108.7
(-0.7) 		70.1
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 49.4
(-2.7)
P 		138.8
(3)
P 		45.2
(-3)
P 		78
(-0.9)
P 		67.7
(-1.6)
P 		95.7
(0.2)
P 		94
B 81
(0.8)
P 		94.8
(3)
P 		56.3
(-3)
P 		59.8
(-2.5)
P 		82
(1)
P 		94.3
(2.9)
P 		39
C 183.3
(3)
P 		67.3
(-2.2)
P 		88.7
(-1.2)
P 		49.3
(-3)
P 		102.8
(-0.6)
P 		101.6
(-0.7)
P 		134
avr 104.6
(3) 		100.3
(2.4) 		63.4
(-2.9) 		62.4
(-3) 		84.2
(0.1) 		97.2
(1.9) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.844
Sequence Type Exemplar sequence
Representative Public ID ZC308.1 NCBI
Target Description ZC308.1 /REP_DB=WormBase Gene ID /WP=CE15159 /TR=O17088 /GB=AAB70341.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059441(11), NM_059440(11), NM_001026674(11), NM_001026673(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059441 NCBI Caenorhabditis elegans defective in Germ Line Development family member (gld-2) (gld-2) mRNA, complete cds. 11/11 A 
NM_059440 NCBI Caenorhabditis elegans defective in Germ Line Development family member (gld-2) (gld-2) mRNA, complete cds. 11/11 A 
NM_001026674 NCBI Caenorhabditis elegans defective in Germ Line Development family member (gld-2) (gld-2) mRNA, complete cds. 11/11 None
NM_001026673 NCBI Caenorhabditis elegans defective in Germ Line Development family member (gld-2) (gld-2) mRNA, complete cds. 11/11 None
SNAP00000042588 ENSEMBL cdna:SNAP chromosome:CEL140:I:6389569:6393219:1 11/11 None
GENEFINDER00000042590 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6389569:6393219:1 11/11 None
ZC308.1a ENSEMBL cdna:known chromosome:CEL140:I:6378100:6394278:1 gene:ZC308.1 11/11 A 
ZC308.1c ENSEMBL cdna:known chromosome:CEL140:I:6384832:6393219:1 gene:ZC308.1 11/11 A 
ZC308.1d ENSEMBL cdna:known chromosome:CEL140:I:6385519:6393219:1 gene:ZC308.1 11/11 None
ZC308.1b ENSEMBL cdna:known chromosome:CEL140:I:6389569:6393219:1 gene:ZC308.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6389497-6393148(+) 94.88 100.0
Public Domain and Genome References
Ensembl ZC308.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70342 Defective in germ line development protein 2, isoform a [Caenorhabditis elegans] ref|NP_491842.2| defective in Germ Line Development family member (gld-2) [Caenorhabditis elegans] gb|AAM94369.1| regulatory cytoplasmic polyA polymerase [Caenorhabditis elegans] 0.0
blast AAO21479 Defective in germ line development protein 2, isoform d [Caenorhabditis elegans] ref|NP_001021845.1| defective in Germ Line Development family member (gld-2) [Caenorhabditis elegans] 0.0
blast AAO21478 Defective in germ line development protein 2, isoform c [Caenorhabditis elegans] ref|NP_491841.2| defective in Germ Line Development family member (gld-2) [Caenorhabditis elegans] 0.0
blast AAO21477 Defective in germ line development protein 2, isoform b [Caenorhabditis elegans] ref|NP_001021844.1| defective in Germ Line Development family member (gld-2) [Caenorhabditis elegans] pir||T32275 hypothetical protein ZC308.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 9.8E-11
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 9.8E-11
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 9.8E-11
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 9.8E-11
Pfam IPR002058 EMBL-EBI PAP/25A-associated domain 9.8E-11
Sequence
Target Sequence 
>C. ELEGANS:182167_AT
caacacaggagctgctgtctttgccgccacctatgaaggtgaacgtcctttggctcaaca
acctaatacgattgcgtgtgctagtcttcgtgtcttgaattctattcctgtttcatctgg
tccaggacactatcactaccaacaacaatccaatcagaatctgtcacgaccacaacgacc
aggaagtaaccaaggataccaaatgaataataatcgtgggttcaacggcaacaatcagca
gcaacatcaaaatcggcgatcattcaacaatcagtcatcatcgaatccaggaaacggatc
tactggaccacgatcttcaagatctaatgaaaacgtcagagactcgtcacgtcaacagaa
cagtcagaaaggaagttcgggagtgtctgtttctaaggagaacgtggcaagtacgaccgg
agtcccagtagacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACACAGGAGCTGCTGTCTTTGCC 49 189 2064 Antisense
GAAGGTGAACGTCCTTTGGCTCAAC 388 333 2098 Antisense
CGATTGCGTGTGCTAGTCTTCGTGT 667 247 2132 Antisense
GTCTTCGTGTCTTGAATTCTATTCC 167 469 2147 Antisense
TTCTATTCCTGTTTCATCTGGTCCA 685 689 2163 Antisense
GGTCCAGGACACTATCACTACCAAC 663 501 2182 Antisense
CAGAATCTGTCACGACCACAACGAC 492 203 2218 Antisense
GGAAACGGATCTACTGGACCACGAT 314 527 2353 Antisense
GTCAGAGACTCGTCACGTCAACAGA 513 465 2398 Antisense
AGTTCGGGAGTGTCTGTTTCTAAGG 104 63 2437 Antisense
GTACGACCGGAGTCCCAGTAGACAA 654 457 2474 Antisense
Sequence Source Affymetrix Proprietary Database