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[182166_at]

Description C44C1.1 /REP_DB=WormBase Gene ID /WP=CE27851 /TR=Q18611 /GB=AAA82366.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 10      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 32      6grp_total > 13      4grp_total > 58      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1929
1 2 3 4 range
A 877.9
(-1.3)
P 		1900.6
(1.9)
P 		2251.7
(3)
P 		322.8
(-3)
P 		1929
B 960.2
(-1.1)
P 		1852.6
(2.1)
P 		2095.7
(3)
P 		415.8
(-3)
P 		1680
C 797.8
(-1.8)
P 		1645
(1.7)
P 		1960.5
(3)
P 		498.7
(-3)
P 		1462
avr 878.6
(-1.3) 		1799.4
(1.9) 		2102.6
(3) 		412.4
(-3) 		1690

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 722
1 2 3 4 5 6 range
A 1470.5
(3)
P 		1157.8
(-0.1)
P 		1391.7
(2.2)
P 		1338.8
(1.7)
P 		1258.8
(0.9)
P 		864.2
(-3)
P 		606
B 1541.6
(3)
P 		1385.9
(1.5)
P 		1174.1
(-0.6)
P 		1480.4
(2.4)
P 		1289.8
(0.5)
P 		936.1
(-3)
P 		606
C 1268.5
(1.4)
P 		1382.3
(2.5)
P 		1375.2
(2.4)
P 		1438
(3)
P 		1054.7
(-0.7)
P 		819.5
(-3)
P 		619
avr 1426.9
(3) 		1308.7
(1.7) 		1313.7
(1.8) 		1419.1
(2.9) 		1201.1
(0.6) 		873.3
(-3) 		554
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 636
1 2 3 4 range
A 319.6
(0)
P 		412.6
(1)
P 		588.6
(3)
P 		47.3
(-3)
P 		541
B 306.2
(0.3)
P 		457.5
(2.6)
P 		485.6
(3)
P 		88.6
(-3)
P 		397
C 264.1
(-1.2)
P 		472.9
(0.9)
P 		683.3
(3)
P 		84.1
(-3)
P 		599
avr 296.6
(-0.4) 		447.7
(1.4) 		585.8
(3) 		73.3
(-3) 		513

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 271.1
(-1.2)
P 		411.8
(3)
P 		303.1
(-0.2)
P 		339.6
(0.8)
P 		379.9
(2)
P 		210.4
(-3)
P 		201
B 536.4
(3)
P 		461.3
(1.2)
P 		285.1
(-3)
P 		392.1
(-0.4)
P 		524
(2.7)
P 		349.1
(-1.5)
P 		251
C 470.2
(3)
P 		421.8
(1.5)
P 		350
(-0.7)
P 		289.2
(-2.5)
P 		341.3
(-0.9)
P 		274.3
(-3)
P 		196
avr 425.9
(2.8) 		431.6
(3) 		312.7
(-1.6) 		340.3
(-0.6) 		415.1
(2.4) 		277.9
(-3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182166_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18186
Sequence Type Exemplar sequence
Representative Public ID C44C1.1 NCBI
Target Description C44C1.1 /REP_DB=WormBase Gene ID /WP=CE27851 /TR=Q18611 /GB=AAA82366.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075788(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075788 NCBI Caenorhabditis elegans C44C1.1 (C44C1.1) mRNA, complete cds. 9/11 None
SNAP00000015468 ENSEMBL cdna:SNAP chromosome:CEL140:X:980792:982932:1 9/11 None
GENEFINDER00000015473 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:980792:982932:1 11/11 None
C44C1.1 ENSEMBL cdna:known chromosome:CEL140:X:980789:983023:1 gene:C44C1.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:980791-982932(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44C1.1
Entrez Gene 180451 Entrez gene
SwissProt Q18611 EMBL-EBI
WormBase CE35432 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82366 Hypothetical protein C44C1.1 [Caenorhabditis elegans] ref|NP_508189.2| C44C1.1 [Caenorhabditis elegans] 1.0E-158
blast AAA82366 Hypothetical protein C44C1.1 [Caenorhabditis elegans] ref|NP_508189.2| C44C1.1 [Caenorhabditis elegans] 1.0E-155
blast CAE63588 Hypothetical protein CBG08079 [Caenorhabditis briggsae] 1.0E-135
blast CAE63588 Hypothetical protein CBG08079 [Caenorhabditis briggsae] 1.0E-132
blast AAA82366 Hypothetical protein C44C1.1 [Caenorhabditis elegans] ref|NP_508189.2| C44C1.1 [Caenorhabditis elegans] 1.0E-122
blast CAE63588 Hypothetical protein CBG08079 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508189.2 6 7-26,41-63,76-95,110-128,140-162,240-262
C44C1.1 6 7-26,41-63,76-95,110-128,140-162,240-262
SNAP00000015468 3 4-26,91-113,191-213
GENEFINDER00000015473 6 7-26,41-63,76-95,110-128,140-162,253-275
Sequence
Target Sequence 
>C. ELEGANS:182166_AT
gaactacctggatgactttcccaaaatggcttcttcatcgacaggtaccaaagtccacga
aaacgtattcaattcctatccaggtccttgtcgagcttgacgagtctcatgaattcctgg
gaagagtcatgggagctaacttcatagcgtcgtacattgtctcaactcatgttctccact
gggaatccgaacaagacagaaacgtggcagttgacggacgtgtcatttgttgcatttcaa
tccttggcgcccaaatctggtcacagacctatgcccactggtccggaaaccactgggttg
gaattagcctcttctccacatggactgtcatctccttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTACCTGGATGACTTTCCCAAA 82 351 401 Antisense
ATGGCTTCTTCATCGACAGGTACCA 136 53 426 Antisense
ATTCAATTCCTATCCAGGTCCTTGT 138 13 467 Antisense
GTCCTTGTCGAGCTTGACGAGTCTC 639 475 484 Antisense
GACGAGTCTCATGAATTCCTGGGAA 518 379 499 Antisense
TAGCGTCGTACATTGTCTCAACTCA 592 651 545 Antisense
TCAACTCATGTTCTCCACTGGGAAT 262 629 562 Antisense
GACGGACGTGTCATTTGTTGCATTT 282 377 613 Antisense
AATCTGGTCACAGACCTATGCCCAC 266 169 654 Antisense
CTGGGTTGGAATTAGCCTCTTCTCC 362 241 693 Antisense
TCCACATGGACTGTCATCTCCTTGA 325 587 715 Antisense
Sequence Source Affymetrix Proprietary Database