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[182165_s_at]

Description W02H5.3 /REP_DB=WormBase Gene ID /WP=CE26021 /TR=Q9N2L1 /GB=AAF60383.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 44.1
(-3)
A 		74.6
(-0.3)
P 		98.9
(1.9)
A 		110.9
(3)
P 		67
B 43
(-2.8)
A 		108.1
(3)
M 		50
(-2.2)
A 		41.1
(-3)
A 		67
C 89.7
(0.4)
P 		88.3
(0.3)
A 		39.2
(-3)
A 		127.5
(3)
P 		88
avr 58.9
(-3) 		90.3
(2.5) 		62.7
(-2.3) 		93.2
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 59.3
(1.7)
A 		48.6
(0.3)
A 		38.8
(-1)
A 		68.9
(3)
A 		24.1
(-3)
A 		37
(-1.3)
A 		45
B 40.5
(1)
A 		21.4
(-1.9)
A 		13.7
(-3)
A 		54
(3)
A 		31.9
(-0.3)
A 		52.7
(2.8)
A 		40
C 32.8
(-0.1)
A 		50
(2.2)
A 		55.8
(3)
A 		11.2
(-3)
A 		43.8
(1.4)
A 		43.6
(1.4)
P 		45
avr 44.2
(2.7) 		40
(0.5) 		36.1
(-1.5) 		44.7
(3) 		33.3
(-3) 		44.4
(2.8) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 16
(-3)
A 		16.2
(-2.9)
P 		25.8
(3)
A 		16.2
(-2.9)
P 		10
B 13.7
(-1.4)
A 		26.7
(3)
M 		11.6
(-2.1)
A 		8.8
(-3)
A 		18
C 29.7
(3)
P 		25.4
(1.4)
A 		13.6
(-3)
A 		21.5
(-0.1)
P 		16
avr 19.8
(0.5) 		22.8
(3) 		17
(-1.8) 		15.5
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.9
(-0.9)
A 		17.3
(2.9)
A 		8.5
(-2.3)
A 		17.5
(3)
A 		7.3
(-3)
A 		9
(-2)
A 		10
B 14.1
(1)
A 		7.1
(-1.6)
A 		3.3
(-3)
A 		14.3
(1)
A 		13
(0.6)
A 		19.6
(3)
A 		16
C 12.2
(1.6)
A 		15.3
(3)
A 		14.2
(2.5)
A 		2.3
(-3)
A 		14.2
(2.5)
A 		14.6
(2.7)
P 		13
avr 12.4
(0.9) 		13.2
(1.7) 		8.7
(-3) 		11.4
(-0.2) 		11.5
(-0.1) 		14.4
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182165_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14987
Sequence Type Exemplar sequence
Representative Public ID W02H5.3 NCBI
Target Description W02H5.3 /REP_DB=WormBase Gene ID /WP=CE26021 /TR=Q9N2L1 /GB=AAF60383.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071320(11), NM_071319(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071320 NCBI Caenorhabditis elegans W02H5.3 (W02H5.3) mRNA, complete cds. 11/11 None
NM_071319 NCBI Caenorhabditis elegans W02H5.4 (W02H5.4) mRNA, complete cds. 11/11 None
SNAP00000022930 ENSEMBL cdna:SNAP chromosome:CEL140:V:2627897:2628881:1 11/11 None
SNAP00000022933 ENSEMBL cdna:SNAP chromosome:CEL140:V:2633485:2636539:1 11/11 None
GENEFINDER00000022938 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2627054:2646206:1 11/11 None
W02H5.4 ENSEMBL cdna:known chromosome:CEL140:V:2627054:2628881:1 gene:W02H5.4 11/11 None
W02H5.3 ENSEMBL cdna:known chromosome:CEL140:V:2632642:2634469:1 gene:W02H5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl W02H5.4
W02H5.3
Entrez Gene 189135 Entrez gene
189136 Entrez gene
SwissProt Q9N2K8 EMBL-EBI
WormBase CE26021 Wormbase
CE26021 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503720 W02H5.4 [Caenorhabditis elegans] ref|NP_503721.1| W02H5.3 [Caenorhabditis elegans] gb|AAF60381.2| Hypothetical protein W02H5.4 [Caenorhabditis elegans] gb|AAF60383.2| Hypothetical protein W02H5.3 [Caenorhabditis elegans] 0.0
blast CAE62529 Hypothetical protein CBG06638 [Caenorhabditis briggsae] 0.0
blast AAF39819 Hypothetical protein F45D11.6 [Caenorhabditis elegans] ref|NP_493879.2| F45D11.6 [Caenorhabditis elegans] 1.0E-179
Protein Domains
Database ID Description E-Value
Pfam IPR004875 EMBL-EBI CENP-B protein 2.3E-68
Pfam IPR004875 EMBL-EBI CENP-B protein 2.3E-68
Pfam IPR004875 EMBL-EBI CENP-B protein 2.3E-68
Pfam IPR004875 EMBL-EBI CENP-B protein 2.3E-68
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503721.1 2 20-39,46-68
NP_503720.1 2 20-39,46-68
W02H5.4 2 20-39,46-68
W02H5.3 2 20-39,46-68
Sequence
Target Sequence 
>C. ELEGANS:182165_S_AT
gcaactgcttactatctcaagaccattatcggcccagcattctttggaaaacgcttcctc
gcgtgggatgcatttagatgccacatcagtgacgccacaaaagctgtgttgaaatcgttg
aaaattggcaccgcagtcattcccggaggatgtactaaatttattcaggctcctgacgtg
ttctggaattcaagtttcaaatcaagcattcgtcgcaaatatgaagattggatggttcat
ggcgcaaagagttttactaaaaacaacaatatgcgtccgccatcaatgtttgaatatttg
gaatggatcgagagcgcttggaatgaacttccaaaggatcttattcttcaatcatttaaa
ggatgtggtcttacaaccgcaatcggtggcagcgaagattacgaaattcactgtttcaag
ccatcaggatcaattccatcaggtctcgatcttctgaatcgaacccgaatcgataacacg
ctttctgatcttgcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACTGCTTACTATCTCAAGACCA 40 321 982 Antisense
TCTCAAGACCATTATCGGCCCAGCA 26 613 996 Antisense
ATCGGCCCAGCATTCTTTGGAAAAC 476 33 1009 Antisense
TAGATGCCACATCAGTGACGCCACA 540 653 1056 Antisense
CACCGCAGTCATTCCCGGAGGATGT 277 201 1110 Antisense
TTCAGGCTCCTGACGTGTTCTGGAA 689 685 1145 Antisense
ATGCGTCCGCCATCAATGTTTGAAT 35 41 1252 Antisense
GATGTGGTCTTACAACCGCAATCGG 135 409 1343 Antisense
AATTCCATCAGGTCTCGATCTTCTG 170 177 1413 Antisense
GAACCCGAATCGATAACACGCTTTC 329 335 1442 Antisense
TAACACGCTTTCTGATCTTGCACAA 267 639 1455 Antisense
Sequence Source Affymetrix Proprietary Database