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[182164_s_at]

Description C43H6.4 /REP_DB=WormBase Gene ID /WP=CE06955 /TR=Q18586 /GB=AAA96085.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 80      6grp_total > 30      4grp_total > 31      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 242.4
(3)
P 		158.8
(-1.4)
P 		128.8
(-3)
P 		161.1
(-1.3)
P 		114
B 237.8
(3)
P 		158.2
(-3)
P 		200
(0.2)
P 		210.2
(0.9)
P 		80
C 257.7
(3)
P 		162.2
(-3)
P 		163.9
(-2.9)
P 		215.3
(0.3)
P 		96
avr 246
(3) 		159.7
(-3) 		164.2
(-2.7) 		195.5
(-0.5) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 154.4
(-3)
P 		224.7
(1.3)
P 		253.1
(3)
P 		224.9
(1.3)
P 		200.6
(-0.2)
P 		204.6
(0.1)
P 		99
B 187.9
(-0.8)
P 		246.4
(2.1)
P 		262.1
(2.9)
P 		263.5
(3)
P 		144.8
(-3)
P 		205.6
(0.1)
P 		119
C 258.2
(3)
P 		249.4
(2.4)
P 		175.9
(-3)
P 		202.3
(-1.1)
P 		190.3
(-2)
P 		188.3
(-2.1)
P 		82
avr 200.2
(-0.9) 		240.2
(3) 		230.4
(2) 		230.2
(2) 		178.6
(-3) 		199.5
(-1) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 88.3
(3)
P 		34.5
(-2)
P 		33.7
(-2.1)
P 		23.6
(-3)
P 		65
B 75.8
(3)
P 		39.1
(-3)
P 		46.4
(-1.8)
P 		44.8
(-2.1)
P 		37
C 85.3
(3)
P 		46.6
(-1.7)
P 		57.1
(-0.5)
P 		36.3
(-3)
P 		49
avr 83.1
(3) 		40.1
(-2.4) 		45.7
(-1.7) 		34.9
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 28.5
(-3)
P 		79.9
(3)
P 		55.1
(0.1)
P 		57.1
(0.3)
P 		60.5
(0.7)
P 		49.8
(-0.5)
P 		51
B 65.4
(-1.3)
P 		82
(3)
P 		63.6
(-1.8)
P 		69.8
(-0.2)
P 		58.8
(-3)
P 		76.7
(1.6)
P 		23
C 95.7
(3)
P 		76.1
(0.9)
P 		44.8
(-2.6)
P 		40.7
(-3)
P 		61.6
(-0.7)
P 		63
(-0.6)
P 		55
avr 63.2
(-0.9) 		79.3
(3) 		54.5
(-3) 		55.9
(-2.7) 		60.3
(-1.6) 		63.2
(-0.9) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182164_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18174
Sequence Type Exemplar sequence
Representative Public ID C43H6.4 NCBI
Target Description C43H6.4 /REP_DB=WormBase Gene ID /WP=CE06955 /TR=Q18586 /GB=AAA96085.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076035 NCBI Caenorhabditis elegans C43H6.4 (C43H6.4) mRNA, complete cds. 11/11 None
SNAP00000018903 ENSEMBL cdna:SNAP chromosome:CEL140:X:2404026:2407063:1 11/11 None
GENEFINDER00000018913 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2404026:2407063:1 11/11 None
C43H6.4 ENSEMBL cdna:known chromosome:CEL140:X:2404018:2407296:1 gene:C43H6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2403844-2407063(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43H6.4
Entrez Gene 180544 Entrez gene
SwissProt Q18586 EMBL-EBI
WormBase CE33917 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96085 Hypothetical protein C43H6.4 [Caenorhabditis elegans] ref|NP_508436.2| C43H6.4 [Caenorhabditis elegans] 0.0
blast CAE58882 Hypothetical protein CBG02115 [Caenorhabditis briggsae] 1.0E-31
blast CAE58882 Hypothetical protein CBG02115 [Caenorhabditis briggsae] 3.0E-18
Sequence
Target Sequence 
>C. ELEGANS:182164_S_AT
gagacagcgataccaacgtgagcaatacattattgtaaatacaggaaaacttctcgtcta
tatgcttggtgtaatcaacaacgacgttcttcaagttgagccaagtttcatgagcccttt
gaatatttttaaaggctacaaacttaccgatggattcaaaaattcgtttccaatctttat
gacaaaaactctcagccgacctggtggtcgtgtacctttgctccatcggatcacaatgaa
ttatgatcggatttttggcaataatcaaaatgttgaaaccgaaattacaagacatttgag
gcattactggcccatatttcaactcaataacaataatgatcaggaacgaattcatttgga
agagcaaatgcgtcacgttcaaattgatcgtctcacagacgcagattcgtttggtgttcc
ata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACAGCGATACCAACGTGAGCAA 318 393 1428 Antisense
AAACTTCTCGTCTATATGCTTGGTG 170 129 1474 Antisense
ACGACGTTCTTCAAGTTGAGCCAAG 419 91 1508 Antisense
AGGCTACAAACTTACCGATGGATTC 574 51 1560 Antisense
AATTCGTTTCCAATCTTTATGACAA 636 177 1588 Antisense
TATGACAAAAACTCTCAGCCGACCT 397 655 1605 Antisense
CAGCCGACCTGGTGGTCGTGTACCT 154 167 1620 Antisense
TACCTTTGCTCCATCGGATCACAAT 42 649 1640 Antisense
ATTACTGGCCCATATTTCAACTCAA 311 7 1730 Antisense
GGAAGAGCAAATGCGTCACGTTCAA 362 531 1785 Antisense
ACGCAGATTCGTTTGGTGTTCCATA 22 93 1826 Antisense
Sequence Source Affymetrix Proprietary Database