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[182163_s_at]

Description F44E7.5 /REP_DB=WormBase Gene ID /WP=CE28331 /TR=O16250 /GB=AAC25790.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 99      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 94      6grp_total > 84      4grp_total > 50      6grp_highest_sub > In      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 112.6
(-3)
P 		157.9
(0.5)
P 		190
(3)
P 		154.9
(0.3)
P 		77
B 98.8
(-3)
P 		328.1
(3)
P 		263.8
(1.3)
P 		109.8
(-2.7)
P 		229
C 139.9
(-2.2)
P 		280.5
(3)
P 		200.9
(0.1)
P 		117.9
(-3)
P 		163
avr 117.1
(-3) 		255.5
(3) 		218.2
(1.4) 		127.5
(-2.5) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 767
1 2 3 4 5 6 range
A 177.9
(-3)
P 		519.2
(-0.2)
P 		449.6
(-0.8)
P 		352.2
(-1.6)
P 		905.2
(3)
P 		760.6
(1.8)
P 		727
B 138.2
(-3)
P 		524.9
(1)
P 		530.3
(1.1)
P 		399
(-0.3)
P 		673.5
(2.6)
P 		712
(3)
P 		574
C 143.3
(-3)
P 		571.6
(1.5)
P 		408
(-0.2)
P 		545
(1.2)
P 		685.3
(2.7)
P 		716.9
(3)
P 		574
avr 153.1
(-3) 		538.6
(0.8) 		462.6
(0.1) 		432.1
(-0.2) 		754.7
(3) 		729.8
(2.8) 		602
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 41
(1.1)
P 		34.3
(-0.4)
P 		49.7
(3)
P 		22.7
(-3)
P 		27
B 31.5
(-2.2)
P 		81
(3)
P 		61.1
(0.9)
P 		23.4
(-3)
P 		58
C 46.3
(-0.4)
P 		80.7
(3)
P 		70
(1.9)
P 		19.9
(-3)
P 		61
avr 39.6
(-0.6) 		65.3
(3) 		60.3
(2.3) 		22
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 32.8
(-3)
P 		184.7
(0.8)
P 		97.9
(-1.4)
P 		89.3
(-1.6)
P 		273.2
(3)
P 		185.2
(0.8)
P 		240
B 48.1
(-3)
P 		174.7
(0.4)
P 		128.8
(-0.9)
P 		105.7
(-1.5)
P 		273.6
(3)
P 		265.5
(2.8)
P 		226
C 53.1
(-3)
P 		174.4
(0.9)
P 		103.9
(-1.4)
P 		109.6
(-1.2)
P 		221.7
(2.4)
P 		240
(3)
P 		187
avr 44.7
(-3) 		177.9
(0.8) 		110.2
(-1.1) 		101.5
(-1.4) 		256.2
(3) 		230.2
(2.3) 		212
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182163_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11788
Sequence Type Exemplar sequence
Representative Public ID F44E7.5 NCBI
Target Description F44E7.5 /REP_DB=WormBase Gene ID /WP=CE28331 /TR=O16250 /GB=AAC25790.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182377(11), NM_072114(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182377 NCBI Caenorhabditis elegans F44E7.5b (F44E7.5) mRNA, complete cds. 11/11 None
NM_072114 NCBI Caenorhabditis elegans F44E7.5a (F44E7.5) mRNA, complete cds. 11/11 None
SNAP00000006989 ENSEMBL cdna:SNAP chromosome:CEL140:V:5781619:5783370:-1 11/11 None
GENEFINDER00000006996 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5781619:5783370:-1 11/11 None
F44E7.5b ENSEMBL cdna:known chromosome:CEL140:V:5781466:5783370:-1 gene:F44E7.5 11/11 None
F44E7.5a ENSEMBL cdna:known chromosome:CEL140:V:5781468:5783370:-1 gene:F44E7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5781618-5783370(-) 100.0 100.0
Public Domain and Genome References
Ensembl F44E7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO12430 Hypothetical protein F44E7.5a [Caenorhabditis elegans] ref|NP_504515.2| F44E7.5a [Caenorhabditis elegans] 0.0
blast T31715 hypothetical protein F44E7.5 - Caenorhabditis elegans 0.0
blast CAE64570 Hypothetical protein CBG09321 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182163_S_AT
gatatgttccactcgtgccataatatgaagcgccttgtgattagtaatccgaatactgac
accgatttctcccagttttggccaaagttgaaaggaagcaaagtggaaactctggatcta
atgatccattcggaagacgttctcgaagcaatcaactctaaactctacaaacggctcaaa
tctgtcacagagttctgcttctcatcgaaagcattcaccatcgattatgcaatcgccttc
cttcaaaaatgtgaccaggtcaagtgcttcaactggttcggacttcattcatgtgtggct
ccgattgtaattgcacgacttctgactgacatcccacggagcattgttttcggtggctgc
gttgcttgtcgaagtggagaaaccgttggaaacggtggattcatggaagttggaaatcgc
gtcgctgtcgttcaagtcaccaaacttctcgaacgcgaagatttcaaatctctctacggg
aaaactttggctgatgcagttctcttcgagcggccattcaacgccaactctgtatctgtt
atgtatatacaaaagaaggattcagtttgcggtccaaactgtctcgatattcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGTTCCACTCGTGCCATAATA 510 425 475 Antisense
ATCCGAATACTGACACCGATTTCTC 445 37 521 Antisense
GATTTCTCCCAGTTTTGGCCAAAGT 58 427 538 Antisense
GTCACAGAGTTCTGCTTCTCATCGA 267 465 658 Antisense
GCTTCAACTGGTTCGGACTTCATTC 269 305 740 Antisense
GGACTTCATTCATGTGTGGCTCCGA 301 525 754 Antisense
AATTGCACGACTTCTGACTGACATC 261 179 783 Antisense
GACTGACATCCCACGGAGCATTGTT 366 373 798 Antisense
GAAATCGCGTCGCTGTCGTTCAAGT 286 361 887 Antisense
TTCAACGCCAACTCTGTATCTGTTA 133 685 991 Antisense
CGGTCCAAACTGTCTCGATATTCAT 701 243 1044 Antisense
Sequence Source Affymetrix Proprietary Database