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[182162_at]

Description ZK262.10 /REP_DB=WormBase Gene ID /WP=CE25683 /TR=Q9XTR3 /GB=CAB16551.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 19      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 24.8
(-2.5)
A 		25.4
(-2.5)
A 		16.1
(-3)
A 		123.6
(3)
P 		108
B 29.3
(1.7)
A 		24.3
(0.6)
A 		6.9
(-3)
A 		35.6
(3)
A 		29
C 33.4
(-0.6)
A 		47.4
(1.2)
A 		15
(-3)
A 		61
(3)
P 		46
avr 29.2
(-1.4) 		32.4
(-1.1) 		12.7
(-3) 		73.4
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 25.9
(-1.2)
A 		19.2
(-2.7)
A 		23.8
(-1.7)
A 		17.7
(-3)
A 		45
(3)
A 		35.2
(0.8)
A 		27
B 33.7
(1.1)
A 		42.3
(3)
A 		23.5
(-1.2)
A 		26.2
(-0.6)
A 		42.3
(3)
P 		15.2
(-3)
A 		27
C 23.9
(-1.1)
A 		32.3
(0.9)
A 		15.9
(-3)
A 		23
(-1.3)
A 		34
(1.3)
A 		41.2
(3)
A 		25
avr 27.8
(-0.9) 		31.3
(0.2) 		21.1
(-3) 		22.3
(-2.6) 		40.4
(3) 		30.5
(-0.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9
(-0.9)
A 		5.5
(-2.4)
A 		4.2
(-3)
A 		18.1
(3)
P 		14
B 9.4
(3)
A 		6
(0.4)
A 		1.6
(-3)
A 		7.6
(1.6)
A 		8
C 11.1
(1.2)
A 		13.6
(3)
A 		5.2
(-3)
A 		10.3
(0.6)
P 		8
avr 9.8
(1.4) 		8.4
(0.4) 		3.7
(-3) 		12
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.8
(-2.8)
A 		6.8
(-1.5)
A 		5.2
(-2.5)
A 		4.5
(-3)
A 		13.6
(3)
A 		8.6
(-0.3)
A 		9
B 11.7
(0.1)
A 		14.1
(1.4)
A 		5.7
(-3)
A 		6.9
(-2.4)
A 		17.2
(3)
P 		5.7
(-3)
A 		12
C 8.9
(-0)
A 		9.9
(0.6)
A 		4.1
(-3)
A 		4.6
(-2.7)
A 		11
(1.3)
A 		13.8
(3)
A 		10
avr 8.5
(-0.6) 		10.3
(0.6) 		5
(-3) 		5.3
(-2.8) 		13.9
(3) 		9.4
(-0) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182162_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14355
Sequence Type Exemplar sequence
Representative Public ID ZK262.10 NCBI
Target Description ZK262.10 /REP_DB=WormBase Gene ID /WP=CE25683 /TR=Q9XTR3 /GB=CAB16551.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075203(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075203 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-26) (srj-26) mRNA, complete cds. 11/11 None
GENEFINDER00000013672 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18416925:18426078:1 11/11 None
ZK262.10 ENSEMBL cdna:known chromosome:CEL140:V:18423671:18426051:1 gene:ZK262.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18423670-18426051(+) 99.01 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srj-26
Ensembl ZK262.10
Entrez Gene 191272 Entrez gene
SwissProt Q9XTR3 EMBL-EBI
WormBase CE25683 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16546 Hypothetical protein ZK262.3 [Caenorhabditis elegans] ref|NP_507603.1| ZK262.3 [Caenorhabditis elegans] 1.0E-180
blast CAB16551 Hypothetical protein ZK262.10 [Caenorhabditis elegans] ref|NP_507604.1| Serpentine Receptor, class J family member (srj-26) [Caenorhabditis elegans] 1.0E-173
blast CAB16547 Hypothetical protein ZK262.2 [Caenorhabditis elegans] ref|NP_507602.1| ZK262.2 [Caenorhabditis elegans] 1.0E-152
blast CAB16551 Hypothetical protein ZK262.10 [Caenorhabditis elegans] ref|NP_507604.1| Serpentine Receptor, class J family member (srj-26) [Caenorhabditis elegans] 1.0E-131
blast CAB03267 Hypothetical protein T01G5.3 [Caenorhabditis elegans] ref|NP_506730.1| Serpentine Receptor, class J family member (srj-27) [Caenorhabditis elegans] 5.0E-92
blast CAB05493 Hypothetical protein F22B8.1 [Caenorhabditis elegans] ref|NP_507048.1| Serpentine Receptor, class J family member (srj-29) [Caenorhabditis elegans] 1.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 1.4E-54
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507604.1 7 10-29,42-64,84-106,126-148,201-223,247-269,284-306
ZK262.10 7 10-29,42-64,84-106,126-148,201-223,247-269,284-306
GENEFINDER00000013672 7 314-336,397-416,431-453,466-488,590-612,636-658,673-695
Sequence
Target Sequence 
>C. ELEGANS:182162_AT
ctacggcttactactctctgtagctcactgcttcctgctcaccagcgcctggaccttctc
cgcctaccttcttctagtcccggagccagaaagaaggttttatatggctcaggtgataag
tgaagttttatcacaaaatgtgcatgagatgaatattttgatagcggtttatgaggacct
aagcccaaaagtcacttggaactccagacttggtgtattcttggtgtctatcatctcaat
actatccgtacttatctacattttattcagcatcttaatcgtctctaaactccggagcac
cgacctggcacttagccaaaaaaccaagcgactccagaagcagttggccaaatccctggc
ggttcaggccacaattccccttatcgtagatctttttccgtgcttttttgtgtggtacat
gccgattttcaaagttaacattgggtactggacatattggttcgcgtcgatttttatatc
gttttttccggttttcgaccccctggcgatgttttactttttgccggtgtttcgagttag
gctccgacaaattttgagaatgaaagaacgacctgcaagggtttctgcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACGGCTTACTACTCTCTGTAGCT 637 225 399 Antisense
TTCTTCTAGTCCCGGAGCCAGAAAG 27 689 467 Antisense
GGAACTCCAGACTTGGTGTATTCTT 38 531 596 Antisense
GTGTATTCTTGGTGTCTATCATCTC 154 487 611 Antisense
GCATCTTAATCGTCTCTAAACTCCG 202 309 668 Antisense
GAAGCAGTTGGCCAAATCCCTGGCG 199 341 735 Antisense
CACAATTCCCCTTATCGTAGATCTT 560 193 768 Antisense
TTTCCGTGCTTTTTTGTGTGGTACA 533 669 793 Antisense
GGGTACTGGACATATTGGTTCGCGT 568 495 841 Antisense
GGTGTTTCGAGTTAGGCTCCGACAA 535 499 924 Antisense
GAACGACCTGCAAGGGTTTCTGCTA 66 347 964 Antisense
Sequence Source Affymetrix Proprietary Database