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[182161_at]

Description C17E4.10 /REP_DB=WormBase Gene ID /WP=CE08259 /TR=Q93231 /GB=CAB02748.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 61      6grp_total > 36      4grp_total > 38      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 388
1 2 3 4 range
A 620.4
(3)
P 		334.7
(-2.9)
P 		330.9
(-3)
P 		335.3
(-2.9)
P 		290
B 611.8
(3)
P 		306.8
(-3)
P 		362.4
(-1.9)
P 		521.5
(1.2)
P 		305
C 621.7
(3)
P 		566.8
(2.1)
P 		234.2
(-3)
P 		314.6
(-1.8)
P 		388
avr 618
(3) 		402.8
(-1.2) 		309.2
(-3) 		390.5
(-1.4) 		309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 398
1 2 3 4 5 6 range
A 540.5
(1.1)
P 		665.2
(3)
P 		383.1
(-1.3)
P 		536.4
(1)
P 		272.2
(-3)
P 		438.9
(-0.5)
P 		393
B 566.5
(3)
P 		443.3
(0.4)
P 		389.7
(-0.8)
P 		490.1
(1.4)
P 		283.7
(-3)
P 		435.6
(0.2)
P 		283
C 585.9
(3)
P 		495.1
(1.3)
P 		372.7
(-1)
P 		320.1
(-2)
P 		267.7
(-3)
P 		397.6
(-0.6)
P 		318
avr 564.3
(3) 		534.5
(2.4) 		381.8
(-0.8) 		448.9
(0.6) 		274.5
(-3) 		424
(0.1) 		290
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 225.9
(3)
P 		72.7
(-2.2)
P 		86.5
(-1.7)
P 		49.1
(-3)
P 		177
B 195.1
(3)
P 		75.8
(-3)
P 		84
(-2.6)
P 		111.1
(-1.2)
P 		119
C 205.8
(3)
P 		162.9
(1.3)
P 		81.6
(-1.9)
P 		53
(-3)
P 		153
avr 208.9
(3) 		103.8
(-1.6) 		84
(-2.4) 		71.1
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 99.6
(-2.3)
P 		236.6
(3)
P 		83.4
(-2.9)
P 		136
(-0.9)
P 		82.1
(-3)
P 		106.9
(-2)
P 		155
B 197.1
(3)
P 		147.6
(0.1)
P 		94.6
(-3)
P 		129.8
(-0.9)
P 		115.3
(-1.8)
P 		162.4
(1)
P 		103
C 217.2
(3)
P 		151.1
(0.4)
P 		94.9
(-1.8)
P 		64.4
(-3)
P 		86.6
(-2.1)
P 		133.1
(-0.3)
P 		153
avr 171.3
(2.5) 		178.4
(3) 		91
(-3) 		110.1
(-1.7) 		94.7
(-2.7) 		134.1
(-0) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182161_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1618
Sequence Type Exemplar sequence
Representative Public ID C17E4.10 NCBI
Target Description C17E4.10 /REP_DB=WormBase Gene ID /WP=CE08259 /TR=Q93231 /GB=CAB02748.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060106(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060106 NCBI Caenorhabditis elegans C17E4.10 (C17E4.10) mRNA, complete cds. 10/11 None
GENEFINDER00000000966 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9439479:9448889:1 10/11 None
SNAP00000000957 ENSEMBL cdna:SNAP chromosome:CEL140:I:9446596:9447043:1 9/11 None
C17E4.10 ENSEMBL cdna:known chromosome:CEL140:I:9443526:9449139:1 gene:C17E4.10 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000956 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9443519-9446974(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17E4.10
Entrez Gene 172770 Entrez gene
SwissProt Q93231 EMBL-EBI
WormBase CE32589 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02752 Hypothetical protein C17E4.9 [Caenorhabditis elegans] ref|NP_492506.1| C17E4.9 [Caenorhabditis elegans] 1.0E-169
blast CAB02748 Hypothetical protein C17E4.10 [Caenorhabditis elegans] ref|NP_492507.2| C17E4.10 [Caenorhabditis elegans] 1.0E-160
blast CAE60188 Hypothetical protein CBG03745 [Caenorhabditis briggsae] 1.0E-154
blast CAE60189 Hypothetical protein CBG03746 [Caenorhabditis briggsae] 1.0E-85
blast CAB02748 Hypothetical protein C17E4.10 [Caenorhabditis elegans] ref|NP_492507.2| C17E4.10 [Caenorhabditis elegans] 2.0E-46
blast CAE60189 Hypothetical protein CBG03746 [Caenorhabditis briggsae] 7.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000402 EMBL-EBI Na+/K+ ATPase, beta subunit 2.6E-57
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000000966 1 53-75
Sequence
Target Sequence 
>C. ELEGANS:182161_AT
gaaagcagttcttgagcgggttactgtagaagaaactgacgatgaagagactgaaactga
aacagagacagaaaatgaggaaatggatgaaaaagatgtttatgatgatgttcgaagaca
gatcgctgcagtttccgacaatccgatggttttcggctggaatgctaaatcaaataagga
gcaactggagaaaccgacaagtctcccacttcattatgagcttgaggccgattgttcaac
acctcgaagagcagagttttctatgaatcctgaagacgattacgaaaatcaatcagaaga
tgccacgcctgccacgtcatcaggcgaagaaggtgttcttcaacaatcccttcttcaact
tcaaaaacaacttcgaaaaaccgacgttcgttgttctcgtctcgagaagatttgtgaatt
tcaacaggtacttggtcttggccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGCAGTTCTTGAGCGGGTTACT 335 359 684 Antisense
AAGACAGATCGCTGCAGTTTCCGAC 455 153 798 Antisense
GCAGTTTCCGACAATCCGATGGTTT 3 313 811 Antisense
GATGGTTTTCGGCTGGAATGCTAAA 319 407 828 Antisense
GGAGAAACCGACAAGTCTCCCACTT 434 517 870 Antisense
AAGTCTCCCACTTCATTATGAGCTT 345 157 882 Antisense
GAGGCCGATTGTTCAACACCTCGAA 563 405 907 Antisense
TCAATCAGAAGATGCCACGCCTGCC 132 633 972 Antisense
AAGGTGTTCTTCAACAATCCCTTCT 633 159 1013 Antisense
CGTTCGTTGTTCTCGTCTCGAGAAG 173 245 1068 Antisense
TTCAACAGGTACTTGGTCTTGGCCC 543 653 1103 Antisense
Sequence Source Affymetrix Proprietary Database