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[182160_at]

Description Y46G5A.6 /REP_DB=WormBase Gene ID /WP=CE24303 /TR=Q9U2D7 /GB=CAB60375.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 44.9
(-3)
A 		77.6
(0.9)
A 		48.2
(-2.6)
A 		95.7
(3)
A 		51
B 85.2
(0.5)
A 		56.6
(-3)
A 		74.3
(-0.8)
A 		105.5
(3)
A 		49
C 85.1
(-0.5)
A 		42.1
(-3)
A 		58.7
(-2)
A 		143.3
(3)
A 		101
avr 71.7
(-1.6) 		58.8
(-3) 		60.4
(-2.8) 		114.8
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 86.3
(0.9)
A 		74
(-2.5)
A 		80
(-0.8)
A 		94
(3)
A 		82.1
(-0.3)
A 		72.1
(-3)
A 		22
B 72.5
(1.2)
A 		83.6
(3)
A 		68.1
(0.4)
A 		47.2
(-3)
A 		66.2
(0.1)
A 		78.7
(2.2)
A 		36
C 60.5
(-2.6)
A 		131.9
(3)
A 		67.5
(-2.1)
A 		72.5
(-1.7)
A 		55.8
(-3)
A 		75
(-1.5)
A 		76
avr 73.1
(-1.9) 		96.5
(3) 		71.9
(-2.2) 		71.2
(-2.3) 		68
(-3) 		75.3
(-1.5) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.4
(2.4)
A 		16.8
(3)
A 		12.6
(-3)
A 		14
(-1)
A 		4
B 27.2
(3)
A 		14
(-3)
A 		17.2
(-1.5)
A 		22.5
(0.9)
A 		13
C 28.2
(3)
A 		12.1
(-3)
A 		20.4
(0.1)
A 		24.2
(1.5)
A 		16
avr 23.9
(3) 		14.3
(-3) 		16.7
(-1.5) 		20.2
(0.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 15.9
(-3)
A 		26.3
(3)
A 		17.4
(-2.1)
A 		23.8
(1.6)
A 		24.8
(2.1)
A 		17.5
(-2.1)
A 		10
B 25.2
(1.5)
A 		27.8
(2.5)
A 		16.5
(-1.6)
A 		12.5
(-3)
A 		26.9
(2.1)
A 		29.3
(3)
A 		17
C 22.4
(-1.2)
A 		40.3
(3)
A 		17.2
(-2.4)
A 		14.6
(-3)
A 		18.1
(-2.2)
A 		25.1
(-0.5)
A 		26
avr 21.2
(-1.3) 		31.5
(3) 		17
(-3) 		17
(-3) 		23.3
(-0.4) 		24
(-0.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182160_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3993
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.6 NCBI
Target Description Y46G5A.6 /REP_DB=WormBase Gene ID /WP=CE24303 /TR=Q9U2D7 /GB=CAB60375.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064311(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064311 NCBI Caenorhabditis elegans Y46G5A.6 (Y46G5A.6) mRNA, complete cds. 11/11 None
GENEFINDER00000039046 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12742184:12747903:-1 11/11 None
Y46G5A.6 ENSEMBL cdna:known chromosome:CEL140:II:12742162:12749277:-1 gene:Y46G5A.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038989 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12742227-12749274(-) 98.31 99.87
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.6
Entrez Gene 189958 Entrez gene
SwissProt Q9U2D7 EMBL-EBI
WormBase CE24303 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9307 DNA restriction-modification system inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
15668 type III site-specific deoxyribonuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60375 Hypothetical protein Y46G5A.6 [Caenorhabditis elegans] ref|NP_496712.1| Y46G5A.6 [Caenorhabditis elegans] 0.0
blast CAB60351 Hypothetical protein Y46G5A.4 [Caenorhabditis elegans] ref|NP_496710.1| Y46G5A.4 [Caenorhabditis elegans] sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase 1.0E-157
blast CAB60351 Hypothetical protein Y46G5A.4 [Caenorhabditis elegans] ref|NP_496710.1| Y46G5A.4 [Caenorhabditis elegans] sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase 1.0E-155
blast CAE63450 Hypothetical protein CBG07909 [Caenorhabditis briggsae] 1.0E-152
blast CAE63450 Hypothetical protein CBG07909 [Caenorhabditis briggsae] 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.0E-6
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 5.2E-34
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 7.9E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496712.1 1 918-940
Y46G5A.6 1 918-940
GENEFINDER00000039046 1 731-753
Sequence
Target Sequence 
>C. ELEGANS:182160_AT
cgtcgtcgccagcgatactcaagtggcgatcttcggaagtcaccatcactccgggatgaa
agacgtcggcgacacgattcatctgaaaatgagagaagatccactgccaccgcgtcggaa
aagtcgagaatggtatgtcaaactcgatgagccaccaagtgattctgaagtttatattgc
aaaaaccaatttggcaccggttcgtgttgaaaaatccgctgaaaaagtgaaaaaatcacg
aaactctggccaaaaattgtcaactgacagttcagctgaactgggatccctgctgggttg
gcggggagttggattctgcctcgtcgtcttcattatcgtcatcatcggagtctacagttt
cggaattttgttatttttaaattttttttttcattttgaaaacatgcattttttcaaatt
ctctctgcaaatttggagacatttttattttcagccaatttttttccaatttttttctga
aagtcaggctatcatgattcccatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCGTCGCCAGCGATACTCAAGTG 35 247 2442 Antisense
GTGGCGATCTTCGGAAGTCACCATC 625 491 2464 Antisense
AAGTCACCATCACTCCGGGATGAAA 593 157 2478 Antisense
ACTGCCACCGCGTCGGAAAAGTCGA 649 95 2544 Antisense
GTCAAACTCGATGAGCCACCAAGTG 235 463 2578 Antisense
TCAGCTGAACTGGGATCCCTGCTGG 8 625 2713 Antisense
ATCCCTGCTGGGTTGGCGGGGAGTT 571 3 2727 Antisense
TGGCGGGGAGTTGGATTCTGCCTCG 183 545 2740 Antisense
CATTATCGTCATCATCGGAGTCTAC 190 215 2772 Antisense
CGGAGTCTACAGTTTCGGAATTTTG 625 221 2787 Antisense
GTCAGGCTATCATGATTCCCATTTT 37 467 2924 Antisense
Sequence Source Affymetrix Proprietary Database