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[182159_at]

Description ZK973.2 /REP_DB=WormBase Gene ID /WP=CE24748 /TR=Q9N4L7 /GB=AAF40006.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 45      4grp_high_8_8 > 02      6grp_highest_nonorm > 93      6grp_total > 69      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 496
(1.7)
P 		409.1
(-0.9)
P 		336.7
(-3)
P 		540.7
(3)
P 		204
B 446.8
(2)
P 		252
(-3)
P 		289.5
(-2)
P 		483.9
(3)
P 		232
C 456.4
(3)
P 		283.7
(-3)
P 		358.5
(-0.4)
P 		421.1
(1.8)
P 		173
avr 466.4
(2.4) 		314.9
(-3) 		328.2
(-2.5) 		481.9
(3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 428
1 2 3 4 5 6 range
A 390.3
(-0.6)
P 		316.3
(-1.8)
P 		249.8
(-3)
P 		323
(-1.7)
P 		519.3
(1.7)
P 		594.6
(3)
P 		345
B 503.1
(0.7)
P 		343.9
(-2.2)
P 		302.5
(-3)
P 		458.1
(-0.1)
P 		372.4
(-1.7)
P 		623.9
(3)
P 		321
C 273.7
(-3)
P 		356.9
(-1.8)
P 		337.9
(-2)
P 		318.9
(-2.3)
P 		415.9
(-0.9)
P 		677.5
(3)
P 		404
avr 389
(-1.3) 		339
(-2.2) 		296.7
(-3) 		366.7
(-1.7) 		435.9
(-0.5) 		632
(3) 		335
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 180.6
(3)
P 		88.8
(-2.4)
P 		88
(-2.5)
P 		79.1
(-3)
P 		102
B 142.5
(3)
P 		62.2
(-3)
P 		67.1
(-2.6)
P 		103.1
(0.1)
P 		80
C 151.1
(3)
P 		81.6
(-2.2)
P 		125
(1)
P 		71
(-3)
P 		80
avr 158.1
(3) 		77.5
(-3) 		93.4
(-1.8) 		84.4
(-2.5) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 72
(-2)
P 		112.5
(0.4)
P 		54.4
(-3)
P 		81.9
(-1.4)
P 		156.7
(3)
P 		144.8
(2.3)
P 		102
B 175.1
(0.8)
P 		114.5
(-1.5)
P 		73.5
(-3)
P 		121.3
(-1.2)
P 		151.3
(-0.1)
P 		232.7
(3)
P 		159
C 101.5
(-1.6)
P 		108.9
(-1.3)
P 		86
(-2.2)
P 		64.1
(-3)
P 		134.6
(-0.4)
P 		226.8
(3)
P 		163
avr 116.2
(-0.9) 		112
(-1.1) 		71.3
(-3) 		89.1
(-2.2) 		147.5
(0.5) 		201.4
(3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182159_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.689
Sequence Type Exemplar sequence
Representative Public ID ZK973.2 NCBI
Target Description ZK973.2 /REP_DB=WormBase Gene ID /WP=CE24748 /TR=Q9N4L7 /GB=AAF40006.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058959(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058959 NCBI Caenorhabditis elegans ZK973.2 (ZK973.2) mRNA, complete cds. 11/11 None
GENEFINDER00000023520 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4373665:4379141:1 11/11 None
SNAP00000023514 ENSEMBL cdna:SNAP chromosome:CEL140:I:4376194:4379141:1 11/11 None
ZK973.2 ENSEMBL cdna:known chromosome:CEL140:I:4373657:4381437:1 gene:ZK973.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4373664-4379141(+) 97.58 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK973.2
Entrez Gene 172038 Entrez gene
SwissProt Q9N4L7 EMBL-EBI
WormBase CE24748 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6333 chromatin assembly or disassembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
785 chromatin inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3682 chromatin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF40006 Hypothetical protein ZK973.2 [Caenorhabditis elegans] ref|NP_491360.1| ZK973.2 [Caenorhabditis elegans] 0.0
blast CAE56280 Hypothetical protein CBG23929 [Caenorhabditis briggsae] 3.0E-79
blast CAE56280 Hypothetical protein CBG23929 [Caenorhabditis briggsae] 5.0E-79
blast AAK21431 Hypothetical protein K06A5.1 [Caenorhabditis elegans] ref|NP_491863.2| K06A5.1 [Caenorhabditis elegans] 4.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 3.0E-4
Pfam IPR002110 EMBL-EBI Ankyrin 3.0E-4
Sequence
Target Sequence 
>C. ELEGANS:182159_AT
tgcgctcctatggtaatcgtctgacgattcaatttttgattcctgagcaatggcaggatt
tgagagcagatcacgagtttatgctggttgtcatgccaatggcttatcatcatcagcaca
aaatattttatggatcccctactcctccaccaatgcatttgccagtactatgtggagttt
cgtgtccttcaatgacgaccgagcgatcaattttctacagagccactcgagcccttcgcc
aacactttgaaaaatgcaaaaaggctgctttaaaacccggagatccacttgctgcatatg
atccgatcacaagccttcacacactagaagaaagagatgaaatggtgaaggctcgaattt
cggaaccgatttcgcctatgatgtgcacggtcggtttggatattgatccaacggctccct
gttcatttatgacttgtcaactgattgtctacaaaaccagcgaaaaaaagaatccagtca
cgaataatccatgtggcgggcaaaatgctgtgtctcgtccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGCTCCTATGGTAATCGTCTGAC 545 583 1985 Antisense
TGCTGGTTGTCATGCCAATGGCTTA 135 579 2066 Antisense
AATATTTTATGGATCCCCTACTCCT 473 173 2106 Antisense
TCCTCCACCAATGCATTTGCCAGTA 234 593 2127 Antisense
GTGGAGTTTCGTGTCCTTCAATGAC 181 491 2156 Antisense
GACGACCGAGCGATCAATTTTCTAC 20 379 2178 Antisense
TAAAACCCGGAGATCCACTTGCTGC 333 639 2255 Antisense
CACTTGCTGCATATGATCCGATCAC 271 197 2270 Antisense
GATTTCGCCTATGATGTGCACGGTC 559 427 2352 Antisense
GGCTCCCTGTTCATTTATGACTTGT 587 539 2397 Antisense
GGGCAAAATGCTGTGTCTCGTCCCA 180 493 2482 Antisense
Sequence Source Affymetrix Proprietary Database