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[182158_at]

Description F48E3.6 /REP_DB=WormBase Gene ID /WP=CE02753 /TR=Q9GP99 /GB=AAF99956.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 3
(-3)
A 		37.5
(-1.4)
A 		6.9
(-2.8)
A 		135.1
(3)
A 		132
B 5.5
(-3)
A 		25.5
(-1.6)
A 		4.9
(-3)
A 		92.3
(3)
A 		87
C 5.7
(-2.6)
A 		44
(3)
A 		2.9
(-3)
A 		29.5
(0.9)
A 		41
avr 4.7
(-3) 		35.7
(-0.7) 		4.9
(-3) 		85.6
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 43.7
(-2)
A 		2.9
(-3)
A 		34.1
(-2.2)
A 		2.7
(-3)
A 		18.3
(-2.6)
A 		247.8
(3)
P 		245
B 50.9
(-2.1)
A 		48.7
(-2.2)
A 		3.6
(-3)
A 		24.2
(-2.6)
A 		29.1
(-2.5)
A 		323.5
(3)
P 		320
C 45.7
(-1.9)
A 		3.8
(-3)
A 		6.2
(-2.9)
A 		5.4
(-3)
A 		8.7
(-2.9)
A 		238.9
(3)
P 		235
avr 46.8
(-2.2) 		18.5
(-2.8) 		14.6
(-2.9) 		10.8
(-3) 		18.7
(-2.8) 		270.1
(3) 		259
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1.1
(-3)
A 		8.1
(-0.8)
A 		1.8
(-2.8)
A 		19.8
(3)
A 		19
B 1.8
(-2.8)
A 		6.3
(-1.3)
A 		1.1
(-3)
A 		19.7
(3)
A 		19
C 1.9
(-2.5)
A 		12.7
(3)
A 		1
(-3)
A 		5
(-0.9)
A 		12
avr 1.6
(-2.9) 		9
(0.4) 		1.3
(-3) 		14.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 8.1
(-2.3)
A 		1
(-3)
A 		7.4
(-2.3)
A 		0.7
(-3)
A 		5.5
(-2.5)
A 		60.3
(3)
P 		60
B 17.7
(-2.2)
A 		16.2
(-2.2)
A 		0.9
(-3)
A 		6.4
(-2.7)
A 		11.8
(-2.5)
A 		120.6
(3)
P 		120
C 16.9
(-1.8)
A 		1.2
(-3)
A 		1.6
(-3)
A 		1.1
(-3)
A 		2.8
(-2.9)
A 		80
(3)
P 		79
avr 14.2
(-2.2) 		6.1
(-2.8) 		3.3
(-3) 		2.7
(-3) 		6.7
(-2.7) 		87
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16062
Sequence Type Exemplar sequence
Representative Public ID F48E3.6 NCBI
Target Description F48E3.6 /REP_DB=WormBase Gene ID /WP=CE02753 /TR=Q9GP99 /GB=AAF99956.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076868(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076868 NCBI Caenorhabditis elegans F48E3.6 (F48E3.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000040278 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7495874:7502528:-1 11/11 None
SNAP00000040273 ENSEMBL cdna:SNAP chromosome:CEL140:X:7501641:7502528:-1 9/11 None
F48E3.6 ENSEMBL cdna:known chromosome:CEL140:X:7501178:7502453:-1 gene:F48E3.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7501176-7502452(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48E3.6
Entrez Gene 181008 Entrez gene
SwissProt Q9GP99 EMBL-EBI
WormBase CE02753 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99954 Hypothetical protein F48E3.3 [Caenorhabditis elegans] ref|NP_509268.1| F48E3.3 [Caenorhabditis elegans] 0.0
blast CAE70223 Hypothetical protein CBG16703 [Caenorhabditis briggsae] 0.0
blast XP_594485 PREDICTED: similar to UDP-glucose:glycoprotein glucosyltransferase 1 precursor (UDP-glucose ceramide glucosyltransferase-like 1) (UDP--Glc:glycoprotein glucosyltransferase) (HUGT1) isoform 1 [Bos taurus] 0.0
blast AAF99956 Hypothetical protein F48E3.6 [Caenorhabditis elegans] ref|NP_509269.1| F48E3.6 [Caenorhabditis elegans] 1.0E-147
blast AAF99956 Hypothetical protein F48E3.6 [Caenorhabditis elegans] ref|NP_509269.1| F48E3.6 [Caenorhabditis elegans] 1.0E-127
blast CAE70224 Hypothetical protein CBG16704 [Caenorhabditis briggsae] 3.0E-26
blast CAE70224 Hypothetical protein CBG16704 [Caenorhabditis briggsae] 6.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR009448 EMBL-EBI UDP-glucose:Glycoprotein Glucosyltransferase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509269.1 5 15-32,57-76,86-108,113-135,145-167
F48E3.6 5 15-32,57-76,86-108,113-135,145-167
GENEFINDER00000040278 7 7-26,41-60,81-101,111-133,138-160,170-192,275-297
SNAP00000040273 6 7-26,41-60,81-101,111-133,138-160,170-192
Sequence
Target Sequence 
>C. ELEGANS:182158_AT
ggcacccaagaggttcatattccttgtttgtcatatcaaatcttgtgatgatgatggtgt
acgtttcattcgtaactaatatagccgaacaatgtgtttttatttaccgctggacgcttg
ttatgcctttaagcatcttagcgtcaacagcttacatatcaacgttcataccatcagaag
aaccaggagaccgatggctgttcaacctgtactacaacgttgtaactgctataagtatta
aagatttgtatgctgtgctggttaacgacattcgtgttcatatccattgggagaaagagt
acaataaactcaactacaacatatctcatcaaggtgacgaagttaaccaatccgagtatt
caagttcagatgaagactgggaaaaagtcggagaggatgattgtgatgagacgagtttcc
aaatcgataatatgacgtttttattcaagagcagcctttcgacatctaattatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACCCAAGAGGTTCATATTCCTT 401 535 251 Antisense
ATTTACCGCTGGACGCTTGTTATGC 144 15 352 Antisense
GCATCTTAGCGTCAACAGCTTACAT 131 309 383 Antisense
ACATATCAACGTTCATACCATCAGA 472 105 404 Antisense
AGGAGACCGATGGCTGTTCAACCTG 214 55 435 Antisense
GCTGTGCTGGTTAACGACATTCGTG 575 295 502 Antisense
GACATTCGTGTTCATATCCATTGGG 98 371 517 Antisense
AACTCAACTACAACATATCTCATCA 268 141 557 Antisense
GTGACGAAGTTAACCAATCCGAGTA 691 473 584 Antisense
GACGTTTTTATTCAAGAGCAGCCTT 181 379 684 Antisense
AGCAGCCTTTCGACATCTAATTATG 401 75 700 Antisense
Sequence Source Affymetrix Proprietary Database