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[182156_at]

Description F55A4.3 /REP_DB=WormBase Gene ID /WP=CE11103 /TR=Q94237 /GB=AAB07561.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 114.1
(3)
P 		63.5
(-1.5)
A 		46.4
(-3)
A 		113.5
(2.9)
P 		68
B 119.5
(3)
P 		62.8
(-1.4)
A 		41.8
(-3)
A 		112.1
(2.4)
M 		78
C 164.7
(3)
P 		49.2
(-2.6)
A 		41.9
(-3)
A 		163.8
(3)
P 		123
avr 132.8
(3) 		58.5
(-2) 		43.4
(-3) 		129.8
(2.8) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 54.1
(0.4)
P 		82.4
(3)
P 		37.7
(-1)
A 		16
(-3)
A 		38.5
(-1)
A 		33.4
(-1.4)
A 		66
B 108.6
(3)
P 		56.7
(-0.8)
P 		50.9
(-1.2)
P 		27.1
(-3)
A 		36.5
(-2.3)
A 		31.1
(-2.7)
M 		82
C 88.3
(3)
P 		58.7
(0.2)
P 		42.7
(-1.3)
A 		29.6
(-2.5)
A 		39.2
(-1.6)
A 		24.7
(-3)
A 		64
avr 83.7
(3) 		65.9
(1.2) 		43.8
(-1) 		24.2
(-3) 		38.1
(-1.6) 		29.7
(-2.4) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 41.5
(3)
P 		13.8
(-2.7)
A 		12.1
(-3)
A 		16.6
(-2.1)
P 		29
B 38.1
(3)
P 		15.5
(-1.8)
A 		9.7
(-3)
A 		23.9
(0)
M 		28
C 54.5
(3)
P 		14.1
(-3)
A 		14.6
(-2.9)
A 		27.6
(-1)
P 		40
avr 44.7
(3) 		14.5
(-2.6) 		12.1
(-3) 		22.7
(-1) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 10
(-1.6)
P 		29.3
(3)
P 		8.2
(-2)
A 		4.1
(-3)
A 		11.6
(-1.2)
A 		8.1
(-2)
A 		25
B 37.8
(3)
P 		18.9
(-0.7)
P 		12.3
(-2)
P 		7.2
(-3)
A 		14.8
(-1.5)
A 		11.6
(-2.1)
M 		31
C 32.7
(3)
P 		17.9
(-0.3)
P 		10.9
(-1.9)
A 		5.9
(-3)
A 		12.7
(-1.5)
A 		8.3
(-2.5)
A 		27
avr 26.8
(3) 		22
(1.6) 		10.5
(-1.6) 		5.7
(-3) 		13
(-0.9) 		9.3
(-2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18170
Sequence Type Exemplar sequence
Representative Public ID F55A4.3 NCBI
Target Description F55A4.3 /REP_DB=WormBase Gene ID /WP=CE11103 /TR=Q94237 /GB=AAB07561.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075793(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075793 NCBI Caenorhabditis elegans F55A4.3 (F55A4.3) mRNA, complete cds. 11/11 None
GENEFINDER00000039522 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1023474:1023777:-1 11/11 None
F55A4.3 ENSEMBL cdna:known chromosome:CEL140:X:1023474:1023777:-1 gene:F55A4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1023473-1023777(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A4.3
Entrez Gene 186273 Entrez gene
SwissProt Q94237 EMBL-EBI
WormBase CE11103 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB07561 Hypothetical protein F55A4.3 [Caenorhabditis elegans] ref|NP_508194.1| F55A4.3 [Caenorhabditis elegans] 2.0E-32
blast CAE63584 Hypothetical protein CBG08073 [Caenorhabditis briggsae] 4.0E-26
blast CAE58909 Hypothetical protein CBG02164 [Caenorhabditis briggsae] 3.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508194.1 1 39-61
F55A4.3 1 39-61
GENEFINDER00000039522 1 39-61
Sequence
Target Sequence 
>C. ELEGANS:182156_AT
atggctgaccaagaacttcgtagacgtcgtgttggacaagaagcaacggaaatccggaag
cgacagcgagccgagaggatctacaaaatcgaaaagaaagccgagccgatgagctggacc
tgctatggcctcatcgcgctctctattattggtttcatcctgttcctgatcgaggcattc
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTGACCAAGAACTTCGTAGAC 456 51 13 Antisense
GAACTTCGTAGACGTCGTGTTGGAC 168 349 25 Antisense
GTAGACGTCGTGTTGGACAAGAAGC 662 455 32 Antisense
GGAAATCCGGAAGCGACAGCGAGCC 127 527 60 Antisense
GCGACAGCGAGCCGAGAGGATCTAC 556 289 72 Antisense
GCGAGCCGAGAGGATCTACAAAATC 545 289 78 Antisense
GAAAGCCGAGCCGATGAGCTGGACC 187 359 108 Antisense
CCGATGAGCTGGACCTGCTATGGCC 116 265 118 Antisense
GCGCTCTCTATTATTGGTTTCATCC 21 289 148 Antisense
ATTATTGGTTTCATCCTGTTCCTGA 304 13 157 Antisense
TCCTGTTCCTGATCGAGGCATTCAC 102 595 170 Antisense
Sequence Source Affymetrix Proprietary Database