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[182153_at]

Description R13A1.5 /REP_DB=WormBase Gene ID /WP=CE04841 /TR=Q18578 /GB=AAA83353.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 61      6grp_total > 12      4grp_total > 11      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1162
1 2 3 4 range
A 459.7
(-2.6)
P 		475.4
(-2.5)
P 		395.5
(-3)
P 		1445.8
(3)
P 		1050
B 589.8
(-1.2)
P 		474
(-1.9)
P 		288.7
(-3)
P 		1320.2
(3)
P 		1032
C 454.9
(-1.9)
P 		556.2
(-1.3)
P 		283.7
(-3)
P 		1259.6
(3)
P 		976
avr 501.5
(-1.9) 		501.9
(-1.9) 		322.6
(-3) 		1341.9
(3) 		1019

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 569.9
(3)
P 		406.6
(-0.3)
P 		490.9
(1.4)
P 		319.1
(-2)
P 		365.6
(-1.1)
P 		269
(-3)
P 		301
B 432.2
(-0)
P 		647.1
(3)
P 		410.3
(-0.3)
P 		340.6
(-1.3)
P 		221.5
(-3)
P 		298.3
(-1.9)
P 		426
C 459
(0.7)
P 		563.3
(3)
P 		286.7
(-3)
P 		454.9
(0.6)
P 		341.3
(-1.8)
P 		328.2
(-2.1)
P 		277
avr 487
(1.7) 		539
(3) 		396
(-0.6) 		371.5
(-1.2) 		309.5
(-2.7) 		298.5
(-3) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 167.4
(0.6)
P 		103.2
(-3)
P 		103.4
(-3)
P 		211.6
(3)
P 		108
B 188.1
(0.4)
P 		117.1
(-1.6)
P 		66.9
(-3)
P 		281.3
(3)
P 		214
C 150.6
(-0.3)
P 		159.9
(0.2)
P 		98.9
(-3)
P 		212.4
(3)
P 		114
avr 168.7
(0.3) 		126.7
(-1.5) 		89.7
(-3) 		235.1
(3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 105.1
(0)
P 		144.6
(3)
P 		106.9
(0.1)
P 		80.9
(-1.8)
P 		110.3
(0.4)
P 		65.5
(-3)
P 		79
B 150.4
(-0.1)
P 		215.4
(3)
P 		99.6
(-2.5)
P 		90.2
(-3)
P 		90
(-3)
P 		111.2
(-2)
P 		125
C 170.1
(2.9)
P 		171.9
(3)
P 		73
(-3)
P 		91.5
(-1.9)
P 		110.4
(-0.7)
P 		109.9
(-0.8)
P 		99
avr 141.9
(0.6) 		177.3
(3) 		93.2
(-2.6) 		87.5
(-3) 		103.6
(-1.9) 		95.5
(-2.5) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182153_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9176
Sequence Type Exemplar sequence
Representative Public ID R13A1.5 NCBI
Target Description R13A1.5 /REP_DB=WormBase Gene ID /WP=CE04841 /TR=Q18578 /GB=AAA83353.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068736(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068736 NCBI Caenorhabditis elegans R13A1.5 (R13A1.5) mRNA, complete cds. 11/11 None
SNAP00000003730 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7191158:7191792:-1 11/11 None
GENEFINDER00000003745 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7191158:7191792:-1 11/11 None
R13A1.5 ENSEMBL cdna:known chromosome:CEL140:IV:7191154:7191824:-1 gene:R13A1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7191163-7191798(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13A1.5
Entrez Gene 187851 Entrez gene
SwissProt Q95ZQ7 EMBL-EBI
WormBase CE04841 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501137 R13A1.5 [Caenorhabditis elegans] gb|AAK84561.1| Hypothetical protein R13A1.5 [Caenorhabditis elegans] 9.0E-84
blast CAE61833 Hypothetical protein CBG05803 [Caenorhabditis briggsae] 5.0E-56
Sequence
Target Sequence 
>C. ELEGANS:182153_AT
aattcttttgtgtgtatcctcatcatccgaagcgtttcgtggattgccaagtttgccagg
atacctaactgcatttggatcagatggaaatactgaagatcaaatcagtaatcggtttta
tagtcgtggagtgagagtgaagaattatccaagatatggtggtctggagaacctcgcgga
gccaaaagataaagacccggttcttgctcaaatccgtcaaagtgtacaaatggacattca
aaaaatcagtgacgaagtcggatatgtctcccgtcagatttctgcaatctacaataatca
gaagatgagcaatgaggagagaaaaaaggaaatcgaagtactcactgagaaatatccaaa
gatagtccctgcagttctcaacttgatcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTTTTGTGTGTATCCTCATCA 92 177 39 Antisense
TATCCTCATCATCCGAAGCGTTTCG 651 657 53 Antisense
GAAGCGTTTCGTGGATTGCCAAGTT 399 341 67 Antisense
GATTGCCAAGTTTGCCAGGATACCT 306 431 80 Antisense
AGGATACCTAACTGCATTTGGATCA 341 55 96 Antisense
TATGGTGGTCTGGAGAACCTCGCGG 105 655 193 Antisense
TAAAGACCCGGTTCTTGCTCAAATC 194 639 228 Antisense
CGAAGTCGGATATGTCTCCCGTCAG 6 251 291 Antisense
TGTCTCCCGTCAGATTTCTGCAATC 121 559 303 Antisense
TATCCAAAGATAGTCCCTGCAGTTC 139 657 391 Antisense
TCCCTGCAGTTCTCAACTTGATCGG 221 597 404 Antisense
Sequence Source Affymetrix Proprietary Database