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[182152_at]

Description F08F1.2 /REP_DB=WormBase Gene ID /WP=CE09249 /TR=O17391 /GB=AAB71302.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 46      6grp_cgc > 99      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 109.4
(3)
P 		29.2
(-3)
A 		39.9
(-2.2)
A 		38.8
(-2.3)
A 		80
B 129.3
(2)
P 		147.5
(3)
A 		74.5
(-0.9)
A 		34.4
(-3)
A 		113
C 212.9
(3)
A 		113.4
(-0.8)
A 		55.7
(-3)
A 		82.1
(-2)
A 		157
avr 150.5
(3) 		96.7
(-0.3) 		56.7
(-2.7) 		51.8
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 32.2
(-2.8)
A 		61
(0.1)
A 		47.7
(-1.2)
A 		89.9
(3)
A 		79.2
(1.9)
A 		30.3
(-3)
A 		60
B 65.4
(1.2)
A 		52.8
(0.1)
A 		25.6
(-2.1)
A 		14.7
(-3)
A 		87.3
(3)
A 		15.1
(-3)
A 		73
C 137
(3)
A 		44.5
(-1.5)
A 		89.8
(0.7)
A 		19.3
(-2.7)
A 		123.2
(2.3)
A 		13.2
(-3)
A 		124
avr 78.2
(1.6) 		52.8
(-0.4) 		54.4
(-0.3) 		41.3
(-1.3) 		96.6
(3) 		19.5
(-3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 39.8
(3)
P 		6.3
(-2.9)
A 		10.4
(-2.2)
A 		5.7
(-3)
A 		34
B 41.2
(3)
P 		36.4
(2.2)
A 		17.3
(-1.2)
A 		7.3
(-3)
A 		34
C 70.5
(3)
A 		32.6
(-1)
A 		19.4
(-2.4)
A 		13.8
(-3)
A 		57
avr 50.5
(3) 		25.1
(-0.7) 		15.7
(-2) 		8.9
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 5.9
(-3)
A 		21.7
(2.3)
A 		10.4
(-1.5)
A 		22.8
(2.6)
A 		23.9
(3)
A 		7.4
(-2.5)
A 		18
B 22.8
(0.6)
A 		17.6
(-0.4)
A 		6.2
(-2.6)
A 		3.9
(-3)
A 		35.5
(3)
A 		5.6
(-2.7)
A 		32
C 50.8
(3)
A 		13.6
(-1.8)
A 		22.9
(-0.6)
A 		3.9
(-3)
A 		39.9
(1.6)
A 		4.4
(-2.9)
A 		47
avr 26.5
(1.5) 		17.6
(-0.4) 		13.2
(-1.4) 		10.2
(-2) 		33.1
(3) 		5.8
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16932
Sequence Type Exemplar sequence
Representative Public ID F08F1.2 NCBI
Target Description F08F1.2 /REP_DB=WormBase Gene ID /WP=CE09249 /TR=O17391 /GB=AAB71302.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171740 NCBI Caenorhabditis elegans protein KINase family member (kin-9) (kin-9) mRNA, complete cds. 11/11 A 
SNAP00000012391 ENSEMBL cdna:SNAP chromosome:CEL140:X:8432631:8433419:1 11/11 None
GENEFINDER00000012396 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8432631:8436563:1 11/11 None
F08F1.1b ENSEMBL cdna:known chromosome:CEL140:X:8432600:8437267:1 gene:F08F1.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181098 2 1 NM_171740 182152_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8432629-8433418(+) 100.0 100.0
Public Domain and Genome References
Ensembl F08F1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71302 Protein kinase protein 9, isoform b [Caenorhabditis elegans] ref|NP_741858.1| protein KINase family member (kin-9) [Caenorhabditis elegans] 0.0
blast AAB71301 Protein kinase protein 9, isoform a [Caenorhabditis elegans] ref|NP_741859.1| protein KINase family member (kin-9) [Caenorhabditis elegans] 0.0
blast CAE74901 Hypothetical protein CBG22767 [Caenorhabditis briggsae] 0.0
blast AAB71301 Protein kinase protein 9, isoform a [Caenorhabditis elegans] ref|NP_741859.1| protein KINase family member (kin-9) [Caenorhabditis elegans] 1.0E-159
blast CAE74901 Hypothetical protein CBG22767 [Caenorhabditis briggsae] 1.0E-147
blast AAB71302 Protein kinase protein 9, isoform b [Caenorhabditis elegans] ref|NP_741858.1| protein KINase family member (kin-9) [Caenorhabditis elegans] 2.0E-76
Protein Families
Method ID Description E-Value
hanks 1.2.1 AGC group; AGC I Diacylglycerol-activated/phospholipid-dependent protein kinase C (PKC) family; PKCa 4.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.3E-68
Pfam IPR000719 EMBL-EBI Protein kinase 1.0E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741858.1 1 174-196
F08F1.1b 1 174-196
GENEFINDER00000012396 1 204-226
Sequence
Target Sequence 
>C. ELEGANS:182152_AT
caatgtttaacatatctcgcctcctcagccgctcttgtatccacattggcttttccgacg
ccagccgttgacgactctcacgaagattggtcggcctataaatcaagaaaatattcaacg
tggactccatctccacaaccgtccacaatgaatgcaggaactcagactgatttccgaact
gcaagaaatgaaaacgataaccaaaatcataatctgagtccttcagacattaggtacttg
gaaacgataacaaatttatcgcagcaagcattgaataacgtgaagagtaccattgacaca
ataaatgaagttgaaccaccgatcacgtcaccgccaagatctcaatatcaagcaccatgg
aacaaccagccttatcaacagggttcctgggcatcacaatatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGTTTAACATATCTCGCCTCCT 625 181 22 Antisense
TTGTATCCACATTGGCTTTTCCGAC 133 705 56 Antisense
GACTCTCACGAAGATTGGTCGGCCT 526 371 94 Antisense
TTCAACGTGGACTCCATCTCCACAA 78 685 135 Antisense
CTCCACAACCGTCCACAATGAATGC 430 235 152 Antisense
GAACTCAGACTGATTTCCGAACTGC 353 349 179 Antisense
TGAAGTTGAACCACCGATCACGTCA 334 573 327 Antisense
GTCACCGCCAAGATCTCAATATCAA 15 467 348 Antisense
AAGCACCATGGAACAACCAGCCTTA 113 151 371 Antisense
ACCAGCCTTATCAACAGGGTTCCTG 454 85 386 Antisense
CAGGGTTCCTGGGCATCACAATATG 87 209 400 Antisense
Sequence Source Affymetrix Proprietary Database