[Home] | [Total List]

[182151_at]

Description F29D10.1 /REP_DB=WormBase Gene ID /WP=CE05760 /TR=Q19898 /GB=CAB00092.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 35.2
(1.5)
A 		20.8
(-1.5)
A 		42.2
(3)
A 		13.5
(-3)
A 		29
B 29.6
(-1.4)
A 		14.5
(-3)
A 		29.4
(-1.5)
A 		72.2
(3)
A 		58
C 37.9
(-1.4)
A 		5.1
(-3)
A 		9.5
(-2.8)
A 		132
(3)
P 		127
avr 34.2
(-0.9) 		13.5
(-3) 		27
(-1.6) 		72.6
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 4.3
(-3)
A 		29.7
(0.3)
A 		51.1
(3)
A 		13.7
(-1.8)
A 		5.4
(-2.9)
A 		49.7
(2.8)
A 		47
B 18
(-2.8)
A 		39.1
(-0.2)
A 		37
(-0.5)
A 		16.6
(-3)
A 		65.4
(3)
P 		65
(3)
P 		49
C 8
(-2.4)
A 		30.3
(-0.2)
A 		2.6
(-3)
A 		32.5
(0)
A 		61.5
(3)
P 		38.5
(0.7)
A 		59
avr 10.1
(-3) 		33
(0.4) 		30.2
(-0.1) 		20.9
(-1.4) 		44.1
(2) 		51.1
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 12.8
(3)
A 		4.5
(-1.6)
A 		11
(2)
A 		2
(-3)
A 		11
B 9.4
(-0.1)
A 		3.6
(-3)
A 		6.8
(-1.4)
A 		15.4
(3)
A 		12
C 12.5
(0.2)
A 		1.5
(-3)
A 		3.3
(-2.5)
A 		22.3
(3)
P 		21
avr 11.6
(2) 		3.2
(-3) 		7
(-0.7) 		13.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 0.8
(-3)
A 		10.6
(2.2)
A 		11.1
(2.5)
A 		3.5
(-1.6)
A 		1.6
(-2.6)
A 		12.1
(3)
A 		11
B 6.3
(-2.5)
A 		13
(-0.7)
A 		9
(-1.8)
A 		4.4
(-3)
A 		26.6
(3)
P 		24.2
(2.4)
P 		22
C 3
(-2.3)
A 		9.2
(-0.3)
A 		0.7
(-3)
A 		6.5
(-1.2)
A 		19.9
(3)
P 		12.9
(0.8)
A 		19
avr 3.4
(-3) 		10.9
(0.5) 		6.9
(-1.4) 		4.8
(-2.4) 		16
(2.8) 		16.4
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182151_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.935
Sequence Type Exemplar sequence
Representative Public ID F29D10.1 NCBI
Target Description F29D10.1 /REP_DB=WormBase Gene ID /WP=CE05760 /TR=Q19898 /GB=CAB00092.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059989(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059989 NCBI Caenorhabditis elegans F29D10.1 (F29D10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000040563 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8848275:8850746:1 9/11 None
F29D10.1 ENSEMBL cdna:known chromosome:CEL140:I:8848758:8849252:1 gene:F29D10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8848688-8849183(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29D10.1
Entrez Gene 185117 Entrez gene
SwissProt Q19898 EMBL-EBI
WormBase CE05760 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00092 Hypothetical protein F29D10.1 [Caenorhabditis elegans] ref|NP_492390.1| F29D10.1 [Caenorhabditis elegans] 3.0E-30
blast CAB00092 Hypothetical protein F29D10.1 [Caenorhabditis elegans] ref|NP_492390.1| F29D10.1 [Caenorhabditis elegans] 2.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492390.1 1 20-42
F29D10.1 1 20-42
GENEFINDER00000040563 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:182151_AT
cacttttcagaataacttttgcgattatcgtattgctatcattttcattttcacttcttg
tgatttgtgtgaaaaagaagacaaaaaaggaaaaacaccctgactctccacccactttgg
taacaccaccaccacagggagccaaattgtcttggaaaggacgacagaagccgttggttg
tatttgatgaaaagctatcggaccagtctaaaaaagaaaaaagtgtgaaaatcccaaaaa
ctgtagaggagtcggagaagatagtgaaagtcaagaaagttccatcttcccaaaaagttt
gtgattcgtcagcatctagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTTTTCAGAATAACTTTTGCGAT 42 195 68 Antisense
TTTGCGATTATCGTATTGCTATCAT 215 669 85 Antisense
ATCGTATTGCTATCATTTTCATTTT 374 35 94 Antisense
TTTCATTTTCACTTCTTGTGATTTG 263 673 110 Antisense
CCACCACCACAGGGAGCCAAATTGT 653 273 193 Antisense
AGGACGACAGAAGCCGTTGGTTGTA 502 39 225 Antisense
GAAGCCGTTGGTTGTATTTGATGAA 174 345 234 Antisense
AAGCTATCGGACCAGTCTAAAAAAG 708 147 259 Antisense
GTGTGAAAATCCCAAAAACTGTAGA 181 485 290 Antisense
GTCAAGAAAGTTCCATCTTCCCAAA 556 463 337 Antisense
GTTTGTGATTCGTCAGCATCTAGTA 382 451 364 Antisense
Sequence Source Affymetrix Proprietary Database