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[182149_at] 7TM chemoreceptor, srg family

Description R05D8.6 /REP_DB=WormBase Gene ID /WP=CE23898 /TR=Q9N5G5 /GB=AAF39949.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 18      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 45
(-3)
A 		61.6
(-0)
A 		46.1
(-2.8)
A 		78.5
(3)
A 		34
B 47.6
(-2.6)
A 		80
(-0.8)
A 		40.1
(-3)
A 		149.2
(3)
P 		109
C 21.4
(-3)
A 		61
(-0.5)
A 		28.6
(-2.5)
A 		114.9
(3)
A 		94
avr 38
(-3) 		67.5
(-0.7) 		38.3
(-3) 		114.2
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 45.3
(1.3)
A 		15.1
(-3)
A 		57.5
(3)
A 		21
(-2.2)
A 		37
(0.1)
A 		36.8
(0.1)
A 		42
B 60.7
(3)
A 		17.7
(-3)
A 		41.7
(0.3)
A 		51.2
(1.7)
A 		21.5
(-2.5)
A 		43.4
(0.6)
A 		43
C 21.4
(-1.3)
A 		34
(0.3)
A 		35.5
(0.5)
A 		7.7
(-3)
A 		22.7
(-1.1)
A 		55.2
(3)
A 		48
avr 42.5
(2.3) 		22.3
(-3) 		44.9
(2.9) 		26.6
(-1.9) 		27.1
(-1.7) 		45.1
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 16.4
(3)
A 		13.4
(-0.7)
A 		12
(-2.4)
A 		11.5
(-3)
A 		5
B 15.2
(-1.4)
A 		19.8
(-0.2)
A 		9.3
(-3)
A 		31.8
(3)
P 		23
C 7.1
(-3)
A 		17.5
(2.1)
A 		10
(-1.6)
A 		19.4
(3)
A 		12
avr 12.9
(-1.6) 		16.9
(0.7) 		10.4
(-3) 		20.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 8.4
(-0.4)
A 		5.4
(-2.9)
A 		12.5
(3)
A 		5.3
(-3)
A 		11.2
(1.9)
A 		8.9
(0)
A 		7
B 21.1
(3)
A 		5.9
(-3)
A 		10.1
(-1.3)
A 		13.6
(0)
A 		8.7
(-1.9)
A 		16.2
(1.1)
A 		15
C 7.9
(-0.7)
A 		10.4
(0.1)
A 		9
(-0.4)
A 		1.5
(-3)
A 		7.3
(-1)
A 		18.5
(3)
A 		17
avr 12.5
(1.4) 		7.2
(-2.7) 		10.5
(-0.1) 		6.8
(-3) 		9.1
(-1.2) 		14.5
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15320
Sequence Type Exemplar sequence
Representative Public ID R05D8.6 NCBI
Target Description R05D8.6 /REP_DB=WormBase Gene ID /WP=CE23898 /TR=Q9N5G5 /GB=AAF39949.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071349(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071349 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-58) (srg-58) mRNA, complete cds. 11/11 None
GENEFINDER00000009150 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2757192:2759383:-1 11/11 None
R05D8.6 ENSEMBL cdna:known chromosome:CEL140:V:2758001:2759383:-1 gene:R05D8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009119 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2758000-2759383(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-58
Ensembl R05D8.6
Entrez Gene 187607 Entrez gene
SwissProt Q9N5G5 EMBL-EBI
WormBase CE23898 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503750 Serpentine Receptor, class G (gamma) family member (srg-58) [Caenorhabditis elegans] gb|AAF39949.1| Serpentine receptor, class g (gamma) protein 58 [Caenorhabditis elegans] 1.0E-173
blast NP_503750 Serpentine Receptor, class G (gamma) family member (srg-58) [Caenorhabditis elegans] gb|AAF39949.1| Serpentine receptor, class g (gamma) protein 58 [Caenorhabditis elegans] 1.0E-172
blast CAE66765 Hypothetical protein CBG12120 [Caenorhabditis briggsae] 1.0E-100
blast AAC19258 Serpentine receptor, class g (gamma) protein 61 [Caenorhabditis elegans] ref|NP_503744.2| Serpentine Receptor, class G (gamma) family member (srg-61) [Caenorhabditis elegans] 9.0E-70
blast AAC19258 Serpentine receptor, class g (gamma) protein 61 [Caenorhabditis elegans] ref|NP_503744.2| Serpentine Receptor, class G (gamma) family member (srg-61) [Caenorhabditis elegans] 1.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503750.1 7 28-50,62-84,104-126,146-168,196-218,239-261,276-298
R05D8.6 7 28-50,62-84,104-126,146-168,196-218,239-261,276-298
GENEFINDER00000009150 7 28-50,62-84,104-126,146-168,196-218,239-261,276-298
Sequence
Target Sequence 
>C. ELEGANS:182149_AT
tcatattcttctgccttggatccatcctgtacagctgcatttgcaactcactgattcctg
gtcacattgtcgaggtctcaatcttaaatggaacactaaccaaaacgacatatgttggtg
tatatactgtggctgtcagtgtcactgcctatttttcggcggcctatttttttttactcg
tctcggttggaatttccacatcgtggattgtaacgaggaagattgagtcgatgagcctca
caaatggtggaatcgggaaaaaattaaacaaaatcgcagtgacctacggttcaatctaca
ctggaatccttttgtggagtatcataagcgctttgaacgcgaacttcaactttttaccgg
acttaattgtgaagttcaactcatattcactgccgttctcctcggatatgatgacgctag
ctctaccgtacattctaatggtatacgacacaaatgtgaagcaggacgtgtttcggaaaa
agtcggtatcggcgagcaacagcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATATTCTTCTGCCTTGGATCCAT 613 619 455 Antisense
ATCCATCCTGTACAGCTGCATTTGC 422 39 474 Antisense
GCATTTGCAACTCACTGATTCCTGG 318 309 491 Antisense
GATTCCTGGTCACATTGTCGAGGTC 427 431 507 Antisense
GTCAGTGTCACTGCCTATTTTTCGG 58 467 589 Antisense
TACTCGTCTCGGTTGGAATTTCCAC 62 647 629 Antisense
GTGACCTACGGTTCAATCTACACTG 652 479 733 Antisense
GTTCAACTCATATTCACTGCCGTTC 641 445 828 Antisense
CTGCCGTTCTCCTCGGATATGATGA 420 237 844 Antisense
TGATGACGCTAGCTCTACCGTACAT 260 567 863 Antisense
GTCGGTATCGGCGAGCAACAGCAGG 20 471 936 Antisense
Sequence Source Affymetrix Proprietary Database