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[182146_at]

Description D1005.6 /REP_DB=WormBase Gene ID /WP=CE07002 /TR=Q18911 /GB=AAB00583.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 3
(-3)
A 		27.6
(3)
A 		3.9
(-2.8)
A 		12.3
(-0.7)
A 		25
B 3.6
(-2.4)
A 		26.6
(3)
A 		1.2
(-3)
A 		6.6
(-1.7)
A 		25
C 12
(-0.4)
A 		6.3
(-1.8)
A 		1.2
(-3)
A 		26
(3)
A 		25
avr 6.2
(-1.6) 		20.2
(3) 		2.1
(-3) 		15
(1.3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 7.7
(3)
A 		1.9
(-2.6)
A 		6.9
(2.2)
A 		7
(2.3)
A 		3
(-1.5)
A 		1.5
(-3)
A 		6
B 1.5
(-2.9)
A 		1.2
(-3)
A 		2.6
(-2.7)
A 		28.5
(3)
A 		2
(-2.8)
A 		1.5
(-2.9)
A 		27
C 1.2
(-3)
A 		3.8
(-2.5)
A 		30
(3)
A 		3.8
(-2.5)
A 		1.9
(-2.9)
A 		4
(-2.4)
A 		29
avr 3.5
(-2.3) 		2.3
(-3) 		13.2
(3) 		13.1
(2.9) 		2.3
(-3) 		2.3
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.1
(-2.9)
A 		6
(3)
A 		1
(-3)
A 		1.8
(-2)
A 		5
B 1.2
(-2.1)
A 		6.6
(3)
A 		0.3
(-3)
A 		1.4
(-2)
A 		6
C 4
(2.4)
A 		1.8
(-0.9)
A 		0.4
(-3)
A 		4.4
(3)
A 		4
avr 2.1
(-0.9) 		4.8
(3) 		0.6
(-3) 		2.5
(-0.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.4
(1.3)
A 		0.7
(-1.7)
A 		1.5
(1.7)
A 		1.8
(3)
A 		0.9
(-0.9)
A 		0.4
(-3)
A 		1
B 0.5
(-2.9)
A 		0.4
(-3)
A 		0.6
(-2.8)
A 		7.6
(3)
A 		0.8
(-2.7)
A 		0.5
(-2.9)
A 		7
C 0.5
(-3)
A 		1.1
(-2.5)
A 		7.6
(3)
A 		0.8
(-2.7)
A 		0.6
(-2.9)
A 		1.3
(-2.3)
A 		7
avr 0.8
(-2.8) 		0.7
(-3) 		3.2
(2.6) 		3.4
(3) 		0.8
(-2.8) 		0.7
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182146_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18622
Sequence Type Exemplar sequence
Representative Public ID D1005.6 NCBI
Target Description D1005.6 /REP_DB=WormBase Gene ID /WP=CE07002 /TR=Q18911 /GB=AAB00583.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075877(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075877 NCBI Caenorhabditis elegans D1005.6 (D1005.6) mRNA, complete cds. 11/11 None
D1005.6 ENSEMBL cdna:known chromosome:CEL140:X:1463110:1464415:-1 gene:D1005.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027968 7/11 Cross Hyb Matching Probes None
SNAP00000027963 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1463109-1464415(-) 88.13 100.0
Public Domain and Genome References
Gene Title
Ensembl D1005.6
Entrez Gene 183884 Entrez gene
SwissProt Q18911 EMBL-EBI
WormBase CE07002 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00583 Hypothetical protein D1005.6 [Caenorhabditis elegans] ref|NP_508278.1| D1005.6 [Caenorhabditis elegans] 2.0E-32
blast CAE56726 Hypothetical protein CBG24513 [Caenorhabditis briggsae] 7.0E-11
Sequence
Target Sequence 
>C. ELEGANS:182146_AT
atgggcgttgctatgatgatgcaacaagctggagctcttgtcggagcagctccgccaccg
ccagaagcagcagagattcagtcacagatacggaaggctaagttaaaattaaataaaaaa
tttctgaaacttaaaccatattttttcagctacactgtagataacatgccgaaagtttca
aaaaaaaaattcgataaaatttttacagaaaatttttgcataaaaaaaaagaaaatgcaa
aacttccaatttttttttaattttaaatgttttgaaaaatctgaaaatttggaaatgtct
gccgagggtcgtacggtgacaatggttaatggtgcgctgtatttcgactatcaactggtt
gctcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCGTTGCTATGATGATGCAAC 124 51 13 Antisense
AACAAGCTGGAGCTCTTGTCGGAGC 545 133 35 Antisense
AGCTCTTGTCGGAGCAGCTCCGCCA 376 77 45 Antisense
AAGCAGCAGAGATTCAGTCACAGAT 35 151 77 Antisense
CAGTCACAGATACGGAAGGCTAAGT 336 207 91 Antisense
AACCATATTTTTTCAGCTACACTGT 667 147 146 Antisense
GCTACACTGTAGATAACATGCCGAA 216 303 161 Antisense
GTCTGCCGAGGGTCGTACGGTGACA 634 469 309 Antisense
ACGGTGACAATGGTTAATGGTGCGC 496 95 325 Antisense
ATGGTGCGCTGTATTTCGACTATCA 391 51 341 Antisense
TTTCGACTATCAACTGGTTGCTCGC 22 671 354 Antisense
Sequence Source Affymetrix Proprietary Database