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[182144_at]

Description H16D19.4 /REP_DB=WormBase Gene ID /WP=CE19929 /TR=Q9XX93 /GB=CAA20939.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 21      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 32.4
(-1.1)
A 		9.8
(-2.8)
A 		7.2
(-3)
A 		88.6
(3)
A 		81
B 72.5
(3)
A 		47.2
(0.7)
A 		7.8
(-3)
A 		28.7
(-1.1)
A 		65
C 47.3
(-0.5)
A 		14.4
(-2.5)
A 		5.8
(-3)
A 		104.7
(3)
A 		99
avr 50.7
(0.9) 		23.8
(-1.5) 		6.9
(-3) 		74
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 35.7
(2.2)
A 		41.1
(3)
A 		13.9
(-1.2)
A 		4.3
(-2.6)
A 		1.8
(-3)
A 		14.7
(-1)
A 		39
B 36.7
(0.8)
A 		55.8
(3)
A 		5.5
(-2.7)
A 		2.7
(-3)
A 		16
(-1.5)
A 		3.3
(-2.9)
A 		53
C 36.3
(2.5)
A 		39.4
(3)
A 		7.6
(-2.2)
A 		2.4
(-3)
A 		15.2
(-0.9)
A 		3.3
(-2.9)
A 		37
avr 36.2
(1.7) 		45.4
(3) 		9
(-2.2) 		3.1
(-3) 		11
(-1.9) 		7.1
(-2.4) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 11.8
(2.4)
A 		2.1
(-2.9)
A 		1.9
(-3)
A 		13
(3)
A 		11
B 23.1
(3)
A 		11.7
(-0.2)
A 		1.8
(-3)
A 		6.1
(-1.8)
A 		21
C 15.7
(2.2)
A 		4.1
(-2.2)
A 		2
(-3)
A 		17.7
(3)
A 		16
avr 16.9
(3) 		6
(-1.4) 		1.9
(-3) 		12.3
(1.2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.6
(-0.4)
A 		14.6
(3)
A 		3
(-1.9)
A 		1.1
(-2.7)
A 		0.5
(-3)
A 		3.6
(-1.7)
A 		14
B 12.8
(1.1)
A 		18.6
(3)
A 		1.3
(-2.8)
A 		0.7
(-3)
A 		6.5
(-1.1)
A 		1.2
(-2.8)
A 		18
C 13.5
(3)
A 		12
(2.3)
A 		1.9
(-2.4)
A 		0.5
(-3)
A 		4.9
(-1)
A 		1.1
(-2.7)
A 		13
avr 11
(1.3) 		15.1
(3) 		2.1
(-2.5) 		0.8
(-3) 		4
(-1.7) 		2
(-2.5) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182144_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1305
Sequence Type Exemplar sequence
Representative Public ID H16D19.4 NCBI
Target Description H16D19.4 /REP_DB=WormBase Gene ID /WP=CE19929 /TR=Q9XX93 /GB=CAA20939.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060799 NCBI Caenorhabditis elegans H16D19.4 (H16D19.4) mRNA, complete cds. 11/11 None
GENEFINDER00000037467 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12649436:12652548:-1 10/11 None
H16D19.4 ENSEMBL cdna:known chromosome:CEL140:I:12648859:12652548:-1 gene:H16D19.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037462 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12648789-12652479(-) 99.12 100.0
Public Domain and Genome References
Gene Title
Ensembl H16D19.4
Entrez Gene 186748 Entrez gene
SwissProt Q9XX93 EMBL-EBI
WormBase CE19929 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20939 Hypothetical protein H16D19.4 [Caenorhabditis elegans] ref|NP_493200.1| H16D19.4 [Caenorhabditis elegans] 0.0
blast AAF99972 Hypothetical protein F52G3.4 [Caenorhabditis elegans] ref|NP_510743.1| F52G3.4 [Caenorhabditis elegans] 8.0E-13
blast AAF99972 Hypothetical protein F52G3.4 [Caenorhabditis elegans] ref|NP_510743.1| F52G3.4 [Caenorhabditis elegans] 9.0E-13
Sequence
Target Sequence 
>C. ELEGANS:182144_AT
ccacctacaagcgacgtgctactattgcaagaacatgtaagatttgcacagagtcgtacg
atggagttaacatcattgccagaattactgaatgtggtcactccgaatatcaacgcaaga
tacgcaacggccagcattcgatataatcgagtaccacagcatgcgcatggagttcaatca
gtcaaaattgcaggaggcgtcacttttcatccgtcggccatgtatactcgaaactcgaat
ttcctaaactttgcaaattttatcataatgcaacattcaaataaggaaattgcaagcatg
cggtatgaactgatgaagaagaaagtggactcggatgtaatcggagtaatcgttgaggaa
atttctttatggtgcatcgaccaatcattacatgaaattaataaatgtttatacaggttc
aagcctatgggcgtttgtgtgatgctctccaattttttcttgctttttattaaactgaac
ataaattcaagtggtacaaatcatgtcaaaagggttgaaaaacaatgttacagccattac
actggacaaatatcaatatacgggtccgacacattccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCTACAAGCGACGTGCTACTAT 6 273 652 Antisense
GTGGTCACTCCGAATATCAACGCAA 255 489 745 Antisense
GCAAGATACGCAACGGCCAGCATTC 397 321 766 Antisense
AATCGAGTACCACAGCATGCGCATG 638 167 796 Antisense
GCATGCGCATGGAGTTCAATCAGTC 94 309 810 Antisense
ATTGCAGGAGGCGTCACTTTTCATC 373 5 838 Antisense
ACTTTTCATCCGTCGGCCATGTATA 317 101 853 Antisense
CGGCCATGTATACTCGAAACTCGAA 65 243 866 Antisense
GGTGCATCGACCAATCATTACATGA 659 491 1022 Antisense
TATGGGCGTTTGTGTGATGCTCTCC 621 655 1077 Antisense
ATATACGGGTCCGACACATTCCTTC 34 21 1207 Antisense
Sequence Source Affymetrix Proprietary Database