[Home] | [Total List]

[182140_at]

Description F42A6.6 /REP_DB=WormBase Gene ID /WP=CE17058 /TR=O44487 /GB=AAB92052.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 15      4grp_high_8_8 > 21      6grp_highest_nonorm > 91      6grp_total > 86      4grp_total > 10      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 146.1
(-2.8)
P 		180.5
(-1.3)
P 		142.3
(-3)
P 		278.1
(3)
P 		136
B 153.1
(-3)
P 		180
(-1)
P 		182.9
(-0.8)
P 		233
(3)
P 		80
C 159.5
(-1.9)
P 		148.4
(-2.4)
P 		135.4
(-3)
P 		263.3
(3)
P 		128
avr 152.9
(-3) 		169.6
(-2) 		153.5
(-3) 		258.1
(3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 109
(-3)
P 		164.9
(-0.9)
P 		190.8
(0)
P 		191.8
(0.1)
P 		145.2
(-1.7)
P 		270.1
(3)
P 		161
B 144.7
(-2.9)
P 		167.7
(-1.5)
P 		143
(-3)
P 		152.4
(-2.4)
P 		241.4
(3)
P 		232.3
(2.4)
P 		98
C 152.5
(-3)
P 		155.9
(-2.6)
P 		162.1
(-1.8)
P 		180.7
(0.4)
P 		181.2
(0.5)
P 		202.4
(3)
P 		50
avr 135.4
(-3) 		162.8
(-1.3) 		165.3
(-1.2) 		175
(-0.6) 		189.3
(0.3) 		234.9
(3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 53.2
(3)
P 		39.2
(-2.3)
P 		37.2
(-3)
P 		40.7
(-1.7)
P 		16
B 48.8
(2.3)
P 		44.5
(-1.3)
P 		42.4
(-3)
P 		49.7
(3)
P 		7
C 52.8
(3)
P 		42.7
(-3)
P 		47.2
(-0.3)
P 		44.4
(-2)
P 		10
avr 51.6
(3) 		42.1
(-3) 		42.3
(-2.9) 		44.9
(-1.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 20.1
(-3)
P 		58.6
(2.1)
P 		41.5
(-0.2)
P 		48.6
(0.7)
P 		43.8
(0.1)
P 		65.8
(3)
P 		46
B 50.4
(-1.5)
P 		55.8
(-1)
P 		34.7
(-3)
P 		40.4
(-2.5)
P 		98.1
(3)
P 		86.6
(1.9)
P 		63
C 56.5
(0.8)
P 		47.6
(-0.8)
P 		41.2
(-2.1)
P 		36.3
(-3)
P 		58.6
(1.2)
P 		67.8
(3)
P 		32
avr 42.3
(-2.4) 		54
(-0.4) 		39.1
(-3) 		41.8
(-2.5) 		66.8
(1.8) 		73.4
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182140_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10914
Sequence Type Exemplar sequence
Representative Public ID F42A6.6 NCBI
Target Description F42A6.6 /REP_DB=WormBase Gene ID /WP=CE17058 /TR=O44487 /GB=AAB92052.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067923(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067923 NCBI Caenorhabditis elegans F42A6.6 (F42A6.6) mRNA, complete cds. 10/11 None
SNAP00000037844 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3334135:3336850:-1 11/11 None
GENEFINDER00000037856 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3327477:3336850:-1 11/11 None
F42A6.6 ENSEMBL cdna:known chromosome:CEL140:IV:3335990:3336850:-1 gene:F42A6.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3335995-3336856(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42A6.6
Entrez Gene 185650 Entrez gene
SwissProt O44487 EMBL-EBI
WormBase CE34559 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91272 Hypothetical protein C36A4.6 [Caenorhabditis elegans] ref|NP_497779.1| CYtochrome P450 family member (cyp-25A4) [Caenorhabditis elegans] 0.0
blast AAB92049 Cytochrome p450 family protein 25A5 [Caenorhabditis elegans] ref|NP_500322.1| CYtochrome P450 family member (cyp-25A5) [Caenorhabditis elegans] 0.0
blast CAA91267 Hypothetical protein C36A4.2 [Caenorhabditis elegans] ref|NP_497776.2| CYtochrome P450 family member (cyp-25A2) [Caenorhabditis elegans] 0.0
blast CAE61459 Hypothetical protein CBG05351 [Caenorhabditis briggsae] 9.0E-94
blast AAB92052 Hypothetical protein F42A6.6 [Caenorhabditis elegans] ref|NP_500324.2| F42A6.6 [Caenorhabditis elegans] 1.0E-90
blast AAB92052 Hypothetical protein F42A6.6 [Caenorhabditis elegans] ref|NP_500324.2| F42A6.6 [Caenorhabditis elegans] 4.0E-72
blast CAE61459 Hypothetical protein CBG05351 [Caenorhabditis briggsae] 2.0E-60
blast XP_393504 PREDICTED: similar to ENSANGP00000014864 [Apis mellifera] 2.0E-35
Protein Families
Method ID Description E-Value
p450 CP12_RAT Animalia; CYP1A2; rat; CP12_RAT; Rattus sp.; P04799 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR008493 EMBL-EBI Protein of unknown function DUF775 2.1E-19
Pfam IPR008493 EMBL-EBI Protein of unknown function DUF775 1.4E-38
Pfam IPR001357 EMBL-EBI BRCT 4.2E-5
Pfam IPR008493 EMBL-EBI Protein of unknown function DUF775 3.7E-26
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.2E-79
Sequence
Target Sequence 
>C. ELEGANS:182140_AT
gtcattgtctcagggaggacgccgatcgaagtggtgccggtctccgatacggagttcacc
tgcgaaattgtaaacgctgacgcgataaaccacgtggtggtcttccttaccggagctcaa
ccgtttccggacggaattggtggctctgtttacatcagatggcccacccaagacggcgga
aattggcattatttgggatttatttgcaacgagaagcccagcgcgatttataaagttgct
caggtgtgcatttttgatggaaaaatgaaagaaaaccaccgaaatttcgatgtttctctc
cttagagatccaaatttttcggctgaaaatcacaatttttccatttttcagctccacaaa
tccgacgcttctcactcgttttcccaatttgacaatcaaatgcaactatattccagtgga
tcagctcaaattggaattaatgctgaaagtttatctgatatcactggacggcaggcagct
gatgggacacaggctagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCATTGTCTCAGGGAGGACGCCGA 20 469 31 Antisense
GACGCCGATCGAAGTGGTGCCGGTC 56 381 48 Antisense
GGTGCCGGTCTCCGATACGGAGTTC 242 495 63 Antisense
TACGGAGTTCACCTGCGAAATTGTA 151 647 78 Antisense
ACGCTGACGCGATAAACCACGTGGT 176 89 104 Antisense
GGACGGAATTGGTGGCTCTGTTTAC 134 525 159 Antisense
TGTTTACATCAGATGGCCCACCCAA 44 561 177 Antisense
CAACGAGAAGCCCAGCGCGATTTAT 322 187 237 Antisense
CTCACTCGTTTTCCCAATTTGACAA 326 219 401 Antisense
GATATCACTGGACGGCAGGCAGCTG 336 425 487 Antisense
GCAGCTGATGGGACACAGGCTAGCC 584 313 505 Antisense
Sequence Source Affymetrix Proprietary Database