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[182139_at]

Description F55A4.7 /REP_DB=WormBase Gene ID /WP=CE19462 /TR=Q94242 /GB=AAD32275.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 13      6grp_total > 22      4grp_total > 11      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 60
(-1.2)
P 		59.5
(-1.2)
M 		24.7
(-3)
A 		140.1
(3)
P 		115
B 66.1
(-1.8)
P 		62.8
(-2.1)
P 		50.9
(-3)
P 		129.2
(3)
P 		78
C 66.6
(-2.7)
P 		70.5
(-2.5)
P 		61.1
(-3)
P 		173.6
(3)
P 		113
avr 64.2
(-1.9) 		64.3
(-1.9) 		45.6
(-3) 		147.6
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 62.6
(-2.2)
A 		76.3
(-1.4)
P 		149.1
(3)
P 		64.9
(-2.1)
P 		49.7
(-3)
A 		52.6
(-2.8)
A 		99
B 93
(3)
P 		88.6
(2.6)
P 		80.9
(1.8)
P 		77.5
(1.5)
P 		50.7
(-1.1)
P 		30.7
(-3)
A 		62
C 93
(1.5)
P 		118
(3)
P 		60.7
(-0.4)
A 		109.6
(2.5)
P 		59.4
(-0.5)
P 		18.2
(-3)
A 		100
avr 82.9
(1.7) 		94.3
(2.8) 		96.9
(3) 		84
(1.8) 		53.3
(-1.1) 		33.8
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 21.9
(3)
P 		12.9
(-0.5)
M 		6.5
(-3)
A 		20.5
(2.5)
P 		15
B 21.1
(0.6)
P 		15.5
(-1.6)
P 		11.8
(-3)
P 		27.5
(3)
P 		16
C 22
(-1.9)
P 		20.3
(-3)
P 		21.3
(-2.3)
P 		29.3
(3)
P 		9
avr 21.7
(1) 		16.2
(-1.6) 		13.2
(-3) 		25.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 11.5
(-3)
A 		27.1
(1.5)
P 		32.5
(3)
P 		16.5
(-1.6)
P 		15
(-2)
A 		12.8
(-2.6)
A 		21
B 32.4
(3)
P 		29.5
(2.2)
P 		19.6
(-0.7)
P 		20.5
(-0.4)
P 		20.6
(-0.4)
P 		11.5
(-3)
A 		21
C 34.5
(2.7)
P 		36
(3)
P 		15.5
(-1.1)
A 		22
(0.2)
P 		19.2
(-0.4)
P 		6.1
(-3)
A 		30
avr 26.1
(1.6) 		30.9
(3) 		22.5
(0.6) 		19.7
(-0.2) 		18.3
(-0.6) 		10.1
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182139_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18606
Sequence Type Exemplar sequence
Representative Public ID F55A4.7 NCBI
Target Description F55A4.7 /REP_DB=WormBase Gene ID /WP=CE19462 /TR=Q94242 /GB=AAD32275.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075798 NCBI Caenorhabditis elegans F55A4.7 (F55A4.7) mRNA, complete cds. 11/11 None
GENEFINDER00000039519 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1037085:1041821:-1 11/11 None
F55A4.7 ENSEMBL cdna:known chromosome:CEL140:X:1037146:1038339:-1 gene:F55A4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1037145-1038339(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A4.7
Entrez Gene 186275 Entrez gene
SwissProt Q94242 EMBL-EBI
WormBase CE19462 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD32274 Hypothetical protein F55A4.8a [Caenorhabditis elegans] ref|NP_741716.1| F55A4.8a [Caenorhabditis elegans] 0.0
blast AAM69108 Hypothetical protein F55A4.8b [Caenorhabditis elegans] ref|NP_741717.1| F55A4.8b [Caenorhabditis elegans] 0.0
blast CAE63579 Hypothetical protein CBG08068 [Caenorhabditis briggsae] 0.0
blast AAD32275 Hypothetical protein F55A4.7 [Caenorhabditis elegans] ref|NP_508199.1| F55A4.7 [Caenorhabditis elegans] 7.0E-84
blast B89456 protein F55A4.7 [imported] - Caenorhabditis elegans 7.0E-84
blast CAE63580 Hypothetical protein CBG08069 [Caenorhabditis briggsae] 5.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR000557 EMBL-EBI Calponin repeat 3.6E-5
Pfam IPR000557 EMBL-EBI Calponin repeat 3.6E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000039519 12 76-98,113-135,140-162,172-194,201-223,233-255,276-298,313-335,342-364,374-396,417-439,444-463
Sequence
Target Sequence 
>C. ELEGANS:182139_AT
taattctgccaagttatatttcctgggaatacggctccaataaattcgcttcacagaagg
gacagcctgcatttggaacaaaccggaacacgaagctcaataacgactccgatgtgcagt
tttggaagaaaaatgataaagttatttatgaatatgtaaaagttgatgaagataccgaag
atgtagagaaatctgaagaagataaagcatgttctgccccttcttcctctatgccaaagt
ttgaagctcaacataatacagatggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTCTGCCAAGTTATATTTCCTG 31 635 140 Antisense
TATTTCCTGGGAATACGGCTCCAAT 559 661 156 Antisense
CGGCTCCAATAAATTCGCTTCACAG 15 241 171 Antisense
CGCTTCACAGAAGGGACAGCCTGCA 301 255 186 Antisense
GGACAGCCTGCATTTGGAACAAACC 95 527 199 Antisense
GGAACAAACCGGAACACGAAGCTCA 491 527 214 Antisense
CACGAAGCTCAATAACGACTCCGAT 552 195 228 Antisense
TAACGACTCCGATGTGCAGTTTTGG 657 637 240 Antisense
AGATAAAGCATGTTCTGCCCCTTCT 238 67 339 Antisense
CCTTCTTCCTCTATGCCAAAGTTTG 624 269 358 Antisense
GAAGCTCAACATAATACAGATGGCA 216 343 382 Antisense
Sequence Source Affymetrix Proprietary Database