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[182138_at]

Description C05D12.5 /REP_DB=WormBase Gene ID /WP=CE02973 /TR=Q17659 /GB=CAA90756.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 19      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 4.3
(-2.4)
A 		30.1
(3)
A 		1.2
(-3)
A 		8.6
(-1.5)
A 		29
B 2.6
(-3)
A 		3
(-2.9)
A 		2.6
(-3)
A 		29.1
(3)
A 		27
C 4.4
(-2.5)
A 		3
(-2.8)
A 		2.3
(-3)
A 		28.7
(3)
A 		26
avr 3.8
(-2.5) 		12
(-0) 		2
(-3) 		22.1
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 8.3
(0.8)
A 		3.3
(-2)
A 		2.7
(-2.3)
A 		1.4
(-3)
A 		1.7
(-2.8)
A 		12.4
(3)
A 		11
B 12.1
(-1.6)
A 		8.5
(-2.1)
A 		1.7
(-3)
A 		2
(-3)
A 		17.6
(-0.9)
A 		47.5
(3)
A 		46
C 8.7
(-1.9)
A 		20.6
(0.1)
A 		2
(-3)
A 		1.9
(-3)
A 		4.5
(-2.6)
A 		38.3
(3)
A 		36
avr 9.7
(-1.5) 		10.8
(-1.3) 		2.1
(-2.9) 		1.8
(-3) 		7.9
(-1.8) 		32.7
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.6
(-1.7)
A 		6.5
(3)
A 		0.3
(-3)
A 		1.3
(-2)
A 		6
B 0.8
(-2.8)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		6.2
(3)
A 		6
C 1.4
(-2.1)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		4.8
(3)
A 		4
avr 1.3
(-1.8) 		2.7
(0.6) 		0.6
(-3) 		4.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.5
(-0.5)
A 		1.2
(-1.2)
A 		0.6
(-2.5)
A 		0.4
(-3)
A 		0.5
(-2.8)
A 		3
(3)
A 		3
B 4.2
(-1.7)
A 		2.8
(-2.2)
A 		0.4
(-3)
A 		0.5
(-3)
A 		7.1
(-0.7)
A 		17.7
(3)
A 		17
C 3.2
(-1.6)
A 		6.3
(-0.1)
A 		0.5
(-3)
A 		0.4
(-3)
A 		1.5
(-2.5)
A 		12.8
(3)
A 		12
avr 3
(-1.6) 		3.4
(-1.3) 		0.5
(-2.9) 		0.4
(-3) 		3
(-1.6) 		11.2
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182138_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3931
Sequence Type Exemplar sequence
Representative Public ID C05D12.5 NCBI
Target Description C05D12.5 /REP_DB=WormBase Gene ID /WP=CE02973 /TR=Q17659 /GB=CAA90756.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064034(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064034 NCBI Caenorhabditis elegans C05D12.5 (C05D12.5) mRNA, complete cds. 11/11 None
SNAP00000031677 ENSEMBL cdna:SNAP chromosome:CEL140:II:11434147:11434836:1 11/11 None
GENEFINDER00000031679 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11434147:11434977:1 11/11 None
C05D12.5 ENSEMBL cdna:known chromosome:CEL140:II:11434147:11434863:1 gene:C05D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11434143-11434860(+) 99.58 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D12.5
Entrez Gene 182262 Entrez gene
SwissProt Q17659 EMBL-EBI
WormBase CE02973 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90756 Hypothetical protein C05D12.5 [Caenorhabditis elegans] ref|NP_496435.1| C05D12.5 [Caenorhabditis elegans] 1.0E-127
blast CAA90756 Hypothetical protein C05D12.5 [Caenorhabditis elegans] ref|NP_496435.1| C05D12.5 [Caenorhabditis elegans] 1.0E-124
blast CAA90756 Hypothetical protein C05D12.5 [Caenorhabditis elegans] ref|NP_496435.1| C05D12.5 [Caenorhabditis elegans] 1.0E-123
blast CAA90755 Hypothetical protein C05D12.4 [Caenorhabditis elegans] ref|NP_496434.1| C05D12.4 [Caenorhabditis elegans] 7.0E-17
blast CAA90755 Hypothetical protein C05D12.4 [Caenorhabditis elegans] ref|NP_496434.1| C05D12.4 [Caenorhabditis elegans] 5.0E-16
Sequence
Target Sequence 
>C. ELEGANS:182138_AT
aaatcaattggcttccggaggatcccaaaagatcatggagttctacagaacaagtgtcga
ggatcttcaaaccaaagtgatgagacaagaaacaattattatggagcagagtaaaaccat
tgagatgttgtctattgaacgaagtaaatcagttaaggttcacgaggatcagatcaatga
gatgcaggaagttatggacaagaaggttaaacaattggaagaaaattacgaggagagact
gaaagagtcaggtaacgaatcaactgcttcgtttgacaaggaatccagagatgattcatt
ggaagattttgttgaagtttccatcaacgagattcttgaaactgcggaatcaaagaggaa
gctcaaagaaagaatcaatcatatggagactcattgtatgacaatgctcaaagaaacaat
ggaagataataagctctattctgcacaactcaaggatcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCAATTGGCTTCCGGAGGATCC 388 115 138 Antisense
TGGCTTCCGGAGGATCCCAAAAGAT 526 541 146 Antisense
ACAAGTGTCGAGGATCTTCAAACCA 551 113 187 Antisense
AAAACCATTGAGATGTTGTCTATTG 556 131 250 Antisense
GTTAAGGTTCACGAGGATCAGATCA 710 445 289 Antisense
GAGTCAGGTAACGAATCAACTGCTT 45 399 382 Antisense
ACTGCTTCGTTTGACAAGGAATCCA 313 97 400 Antisense
GAAGTTTCCATCAACGAGATTCTTG 586 335 451 Antisense
CAACGAGATTCTTGAAACTGCGGAA 165 187 462 Antisense
AATAAGCTCTATTCTGCACAACTCA 660 171 565 Antisense
TATTCTGCACAACTCAAGGATCAAA 27 663 574 Antisense
Sequence Source Affymetrix Proprietary Database