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[182137_at]

Description K09C4.9 /REP_DB=WormBase Gene ID /WP=CE04737 /TR=Q21377 /GB=AAA83619.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 2.6
(-0.7)
A 		3.4
(3)
A 		2.1
(-3)
A 		2.6
(-0.7)
A 		1
B 1
(-3)
A 		0.9
(-3)
A 		38.1
(3)
A 		1.8
(-2.9)
A 		37
C 0.6
(-3)
A 		1.3
(-2.8)
A 		1.7
(-2.7)
A 		21.5
(3)
A 		21
avr 1.4
(-3) 		1.9
(-2.8) 		14
(3) 		8.6
(0.4) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.8
(3)
A 		0.7
(-3)
A 		2.2
(-1.7)
A 		2.9
(-1.1)
A 		1.4
(-2.4)
A 		4.4
(0.1)
A 		7
B 4.7
(3)
A 		2.1
(-1)
A 		3.7
(1.5)
A 		2.1
(-1)
A 		0.8
(-3)
A 		0.9
(-2.8)
A 		4
C 3.3
(-1.6)
A 		2
(-2.3)
A 		1.7
(-2.4)
A 		4.3
(-1.1)
A 		12.5
(3)
A 		0.6
(-3)
A 		12
avr 5.3
(3) 		1.6
(-3) 		2.5
(-1.5) 		3.1
(-0.6) 		4.9
(2.4) 		2
(-2.4) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(3)
A 		0.7
(0.6)
A 		0.5
(-1.8)
A 		0.4
(-3)
A 		1
B 0.3
(-2.9)
A 		0.2
(-3)
A 		8.8
(3)
A 		0.4
(-2.9)
A 		9
C 0.2
(-3)
A 		0.4
(-2.6)
A 		0.6
(-2.3)
A 		3.6
(3)
A 		3
avr 0.5
(-2.8) 		0.4
(-3) 		3.3
(3) 		1.5
(-0.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.4
(3)
A 		0.2
(-3)
A 		0.5
(-1.5)
A 		0.7
(-0.5)
A 		0.4
(-2)
A 		1.1
(1.5)
A 		1
B 1.6
(3)
A 		0.7
(-1.2)
A 		0.9
(-0.2)
A 		0.6
(-1.6)
A 		0.3
(-3)
A 		0.3
(-3)
A 		1
C 1.2
(-1.4)
A 		0.6
(-2.4)
A 		0.4
(-2.7)
A 		0.9
(-1.9)
A 		4
(3)
A 		0.2
(-3)
A 		4
avr 1.4
(1.9) 		0.5
(-3) 		0.6
(-2.5) 		0.7
(-1.9) 		1.6
(3) 		0.5
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182137_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18561
Sequence Type Exemplar sequence
Representative Public ID K09C4.9 NCBI
Target Description K09C4.9 /REP_DB=WormBase Gene ID /WP=CE04737 /TR=Q21377 /GB=AAA83619.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076160(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076160 NCBI Caenorhabditis elegans K09C4.9 (K09C4.9) mRNA, complete cds. 11/11 None
SNAP00000004456 ENSEMBL cdna:SNAP chromosome:CEL140:X:3271342:3271762:-1 11/11 None
GENEFINDER00000004472 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3271342:3271762:-1 11/11 None
K09C4.9 ENSEMBL cdna:known chromosome:CEL140:X:3271342:3271762:-1 gene:K09C4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3271342-3271763(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09C4.9
Entrez Gene 187198 Entrez gene
SwissProt Q21377 EMBL-EBI
WormBase CE04737 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83619 Hypothetical protein K09C4.9 [Caenorhabditis elegans] ref|NP_508561.1| K09C4.9 [Caenorhabditis elegans] 2.0E-55
Sequence
Target Sequence 
>C. ELEGANS:182137_AT
atgcagtcaaacaagaactctatcaatttttcggcctgccaatcacctgagcaactgaat
gtagatcatggcatgcaacaaaaagccaaggattcaggactagaaaaaaataaaagttca
aataaaacaacaaaaggtgtggcgaatggacaagacatggcagaagctttgcccaaaaag
cagaacagcatactgaagacatctcgcaaaacattgggagcactttcttctggacaaata
ttggttcttcggaactgcccaatgaaaaatctggataccgaatctgaatgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAGTCAAACAAGAACTCTATCA 31 43 13 Antisense
TCAATTTTTCGGCCTGCCAATCACC 648 631 35 Antisense
GCCAATCACCTGAGCAACTGAATGT 518 275 50 Antisense
CTGAATGTAGATCATGGCATGCAAC 432 237 67 Antisense
GTGGCGAATGGACAAGACATGGCAG 102 491 151 Antisense
GACATGGCAGAAGCTTTGCCCAAAA 425 367 166 Antisense
AACAGCATACTGAAGACATCTCGCA 387 135 196 Antisense
GCAAAACATTGGGAGCACTTTCTTC 346 319 218 Antisense
GGAGCACTTTCTTCTGGACAAATAT 255 521 229 Antisense
TTGGTTCTTCGGAACTGCCCAATGA 60 655 253 Antisense
ATCTGGATACCGAATCTGAATGCAT 275 35 281 Antisense
Sequence Source Affymetrix Proprietary Database