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[182135_at]

Description ZK867.2 /REP_DB=WormBase Gene ID /WP=CE05120 /TR=Q23653 /GB=AAA82394.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 04      4grp_total > 11      6grp_highest_sub > De      6grp_cgc > 41      6grp_rule_based > S1      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 449
1 2 3 4 range
A 257.7
(-2)
P 		280.2
(-1.5)
P 		216.3
(-3)
P 		470.2
(3)
P 		254
B 245.7
(-1.8)
P 		232.4
(-2.3)
P 		211.3
(-3)
P 		386.2
(3)
P 		175
C 235.6
(-2.5)
P 		256.3
(-2.3)
P 		201.5
(-3)
P 		650.2
(3)
P 		449
avr 246.3
(-2.2) 		256.3
(-2) 		209.7
(-3) 		502.2
(3) 		293

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 257
(3)
P 		170.9
(-0)
P 		176.9
(0.2)
P 		134.3
(-1.3)
P 		145.9
(-0.9)
P 		87.2
(-3)
P 		170
B 174.1
(1.3)
P 		211.5
(3)
P 		101.9
(-2)
P 		121.6
(-1.1)
P 		144.2
(-0.1)
P 		81
(-3)
P 		131
C 197.9
(2.5)
P 		211
(3)
P 		161.2
(1)
P 		159.1
(0.9)
P 		117.4
(-0.8)
P 		62.1
(-3)
P 		149
avr 209.7
(3) 		197.8
(2.5) 		146.7
(0.2) 		138.3
(-0.2) 		135.8
(-0.3) 		76.8
(-3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 93.8
(3)
P 		60.8
(-2.3)
P 		56.6
(-3)
P 		68.8
(-1)
P 		37
B 78.4
(2.3)
P 		57.4
(-1.5)
P 		49
(-3)
P 		82.3
(3)
P 		33
C 78
(-1.8)
P 		73.7
(-2.5)
P 		70.2
(-3)
P 		109.6
(3)
P 		39
avr 83.4
(2.3) 		64
(-1.9) 		58.6
(-3) 		86.9
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 47.4
(1)
P 		60.8
(3)
P 		38.5
(-0.4)
P 		34.1
(-1)
P 		44
(0.5)
P 		21.2
(-3)
P 		40
B 60.6
(1.7)
P 		70.4
(3)
P 		24.7
(-3)
P 		32.2
(-2)
P 		58.6
(1.5)
P 		30.2
(-2.3)
P 		46
C 73.3
(3)
P 		64.4
(2)
P 		41
(-0.7)
P 		32
(-1.7)
P 		38
(-1)
P 		20.8
(-3)
P 		53
avr 60.4
(2.3) 		65.2
(3) 		34.7
(-1.5) 		32.8
(-1.7) 		46.9
(0.3) 		24.1
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17297
Sequence Type Exemplar sequence
Representative Public ID ZK867.2 NCBI
Target Description ZK867.2 /REP_DB=WormBase Gene ID /WP=CE05120 /TR=Q23653 /GB=AAA82394.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029833
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK867.2 ENSEMBL cdna:known chromosome:CEL140:X:7206667:7212491:1 gene:ZK867.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076811 3/11 Cross Hyb Matching Probes None
NM_001029833 8/11 Cross Hyb Matching Probes None
GENEFINDER00000032296 3/11 Cross Hyb Matching Probes None
GENEFINDER00000032297 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7206665-7212490(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK867.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T28066 hypothetical protein ZK867.2 - Caenorhabditis elegans 0.0
blast CAE65857 Hypothetical protein CBG10995 [Caenorhabditis briggsae] 1.0E-171
blast AAX88820 Hypothetical protein ZK867.2 [Caenorhabditis elegans] ref|NP_509212.2| ZK867.2 [Caenorhabditis elegans] 1.0E-156
Sequence
Target Sequence 
>C. ELEGANS:182135_AT
agatgcaccttcctattacgtagcatttactttttcaaagaaacataagaagctactgaa
aaagttcaatagtgcactcattgaagtgttgccagctgtgtctcttattactatcggaca
cggatataatacaaagaaaaaaccatttgagatggttcaaattatcaacagaattttgat
ctcagtttccatattctacttgtgctatgcacatccttacaaaacaaatgcaaaggatct
cgaaaaagaccgaatgcttactaccaacgagtactatgttgaaaaggtgaatcaaatggc
cggcattagctgcgacttgtgtatgcgagccgtttatggtgtgaattatgatttcataca
gctgaagaaggacttcattgaaatgatccgtcttgactgtgaagcattgttccatgaacg
gcctgaagatatctccgagtgtattcgattcctcactacaaaagtggagaagtattcagg
aaaggtgagctcgtttctagcggctaagtcccttatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGCACCTTCCTATTACGTAGCA 230 67 747 Antisense
TTGAAGTGTTGCCAGCTGTGTCTCT 88 705 827 Antisense
AGCTGTGTCTCTTATTACTATCGGA 651 81 840 Antisense
TTTGATCTCAGTTTCCATATTCTAC 172 667 921 Antisense
TGTGCTATGCACATCCTTACAAAAC 354 557 947 Antisense
AGACCGAATGCTTACTACCAACGAG 667 69 993 Antisense
TCAAATGGCCGGCATTAGCTGCGAC 447 629 1038 Antisense
AGCTGCGACTTGTGTATGCGAGCCG 272 79 1054 Antisense
GAGTGTATTCGATTCCTCACTACAA 507 401 1183 Antisense
AAAGGTGAGCTCGTTTCTAGCGGCT 635 121 1227 Antisense
TTCTAGCGGCTAAGTCCCTTATGCT 377 689 1241 Antisense
Sequence Source Affymetrix Proprietary Database