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[182133_at]

Description F08E10.6 /REP_DB=WormBase Gene ID /WP=CE18576 /TR=Q9XXN9 /GB=CAA16505.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 03      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 4.4
(-2.4)
A 		2.7
(-3)
A 		4.9
(-2.2)
A 		19.2
(3)
A 		17
B 4.4
(3)
A 		4.4
(3)
A 		2.7
(-3)
A 		3.1
(-1.6)
A 		2
C 11.4
(-1.5)
A 		2.4
(-3)
A 		4.5
(-2.6)
A 		37.9
(3)
A 		36
avr 6.7
(-1.8) 		3.2
(-3) 		4
(-2.7) 		20.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 2.1
(-2.8)
A 		14.7
(0.7)
A 		11.7
(-0.1)
A 		23
(3)
A 		1.2
(-3)
A 		20.5
(2.3)
A 		22
B 3.4
(-2.7)
A 		26.8
(2.4)
A 		16.4
(0.1)
A 		29.7
(3)
A 		2.1
(-3)
A 		4.2
(-2.5)
A 		28
C 2.7
(-3)
A 		4.4
(-2.5)
A 		13.1
(-0)
A 		17.6
(1.3)
A 		2.7
(-3)
A 		23.6
(3)
A 		21
avr 2.7
(-2.8) 		15.3
(0.7) 		13.7
(0.3) 		23.4
(3) 		2
(-3) 		16.1
(1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.6
(-0.3)
A 		0.6
(-3)
A 		1.3
(-1.1)
A 		2.8
(3)
A 		2
B 1.4
(3)
A 		1.1
(0.8)
A 		0.6
(-3)
A 		0.7
(-2.3)
A 		1
C 3.8
(0.3)
A 		0.7
(-3)
A 		1.6
(-2.1)
A 		6.4
(3)
A 		6
avr 2.3
(0.6) 		0.8
(-3) 		1.2
(-2) 		3.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.4
(-3)
A 		5.2
(2.3)
A 		2.6
(-0.6)
A 		5.8
(3)
A 		0.4
(-3)
A 		5
(2.1)
A 		5
B 1.2
(-2.8)
A 		8.9
(3)
A 		4
(-0.7)
A 		7.9
(2.3)
A 		0.9
(-3)
A 		1.6
(-2.5)
A 		8
C 1
(-2.9)
A 		1.3
(-2.7)
A 		3.3
(-0.9)
A 		3.5
(-0.8)
A 		0.9
(-3)
A 		7.9
(3)
A 		7
avr 0.9
(-2.8) 		5.1
(2.3) 		3.3
(0.1) 		5.7
(3) 		0.7
(-3) 		4.8
(1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182133_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12796
Sequence Type Exemplar sequence
Representative Public ID F08E10.6 NCBI
Target Description F08E10.6 /REP_DB=WormBase Gene ID /WP=CE18576 /TR=Q9XXN9 /GB=CAA16505.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075027(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075027 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-111) (srh-111) mRNA, complete cds. 11/11 A 
SNAP00000039054 ENSEMBL cdna:SNAP chromosome:CEL140:V:17486621:17487478:-1 11/11 None
GENEFINDER00000039056 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17484279:17487478:-1 11/11 None
F08E10.6 ENSEMBL cdna:known chromosome:CEL140:V:17486621:17487754:-1 gene:F08E10.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17486620-17487754(-) 100.0 100.0
chrV:17227624-17481962(-) 92.58 92.58
Public Domain and Genome References
Gene Title
Gene Symbol srh-111
Ensembl F08E10.6
Entrez Gene 184187 Entrez gene
SwissProt Q9XXN9 EMBL-EBI
WormBase CE18576 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16505 Hypothetical protein F08E10.6 [Caenorhabditis elegans] ref|NP_507428.1| Serpentine Receptor, class H family member (srh-111) [Caenorhabditis elegans] 0.0
blast CAB07487 Hypothetical protein T19C9.2 [Caenorhabditis elegans] ref|NP_507363.1| Serpentine Receptor, class H family member (srh-112) [Caenorhabditis elegans] 0.0
blast CAB07489 Hypothetical protein T19C9.4 [Caenorhabditis elegans] ref|NP_507361.2| Serpentine Receptor, class H family member (srh-109) [Caenorhabditis elegans] 1.0E-146
blast CAA16505 Hypothetical protein F08E10.6 [Caenorhabditis elegans] ref|NP_507428.1| Serpentine Receptor, class H family member (srh-111) [Caenorhabditis elegans] 1.0E-136
blast CAA16505 Hypothetical protein F08E10.6 [Caenorhabditis elegans] ref|NP_507428.1| Serpentine Receptor, class H family member (srh-111) [Caenorhabditis elegans] 1.0E-135
blast CAB07487 Hypothetical protein T19C9.2 [Caenorhabditis elegans] ref|NP_507363.1| Serpentine Receptor, class H family member (srh-112) [Caenorhabditis elegans] 1.0E-132
blast CAB07487 Hypothetical protein T19C9.2 [Caenorhabditis elegans] ref|NP_507363.1| Serpentine Receptor, class H family member (srh-112) [Caenorhabditis elegans] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.3E-103
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.7E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507428.1 7 31-53,66-88,108-130,151-173,193-215,252-274,289-311
F08E10.6 7 31-53,66-88,108-130,151-173,193-215,252-274,289-311
SNAP00000039054 5 15-37,58-80,122-144,160-182,197-219
GENEFINDER00000039056 7 15-37,57-79,101-123,130-147,167-189,196-218,254-276
Sequence
Target Sequence 
>C. ELEGANS:182133_AT
atcgcaaaacatctcgtttcgcctatttcacatattttctcattccgttcatagcggctt
acgtaggcatgctaatgattgccgaggaatcagatgctggaaaattacgggctctagcta
tttacccttgccctacacgagagtttttcatattccctgtttgtgtattcgagggcacga
cgagccacatttttctcgtttatgccttggttatgtcacatacatctggaaacattatat
ttcatgtcgcatgtctcgtatactacctttatattgcgccaccacgcacactatctcaaa
atactcgaagagatcagaaaatattcttagtctgcgtgacggcacagacttcggtaccac
ttttggttataatcgctccggccatgatcgttttgttagcatcgtgggctggatattatc
gtcaagaatggatgagtttggctgcaatttgtgttgcaactcacgggctcgccgagagca
ttgcgatcatgatggtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCAAAACATCTCGTTTCGCCTA 630 23 446 Antisense
TCGTTTCGCCTATTTCACATATTTT 207 605 459 Antisense
TTCTCATTCCGTTCATAGCGGCTTA 685 691 482 Antisense
AGCGGCTTACGTAGGCATGCTAATG 128 81 498 Antisense
CATGTCGCATGTCTCGTATACTACC 675 209 688 Antisense
TATACTACCTTTATATTGCGCCACC 200 661 704 Antisense
CCACGCACACTATCTCAAAATACTC 386 273 727 Antisense
AATATTCTTAGTCTGCGTGACGGCA 520 173 765 Antisense
TCCGGCCATGATCGTTTTGTTAGCA 26 595 822 Antisense
GTTAGCATCGTGGGCTGGATATTAT 192 447 840 Antisense
GAGAGCATTGCGATCATGATGGTGC 205 395 919 Antisense
Sequence Source Affymetrix Proprietary Database