[Home] | [Total List]

[182132_at]

Description T23C6.4 /REP_DB=WormBase Gene ID /WP=CE07529 /TR=O02041 /GB=AAB52885.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 0      4grp_high_8_8 > 09      6grp_total > 08      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 143.9
(1.7)
P 		83.7
(-1.7)
P 		60.2
(-3)
A 		166.6
(3)
P 		106
B 173.7
(3)
P 		85.8
(-2.4)
A 		76.3
(-3)
A 		87.3
(-2.3)
A 		97
C 160.8
(3)
P 		99.6
(-2.3)
P 		90.9
(-3)
P 		142.3
(1.4)
P 		70
avr 159.5
(3) 		89.7
(-2) 		75.8
(-3) 		132.1
(1) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 137.7
(3)
P 		96.9
(-0.5)
P 		97.4
(-0.4)
P 		85.5
(-1.5)
P 		67.4
(-3)
P 		89.9
(-1.1)
A 		70
B 110.3
(3)
P 		93.5
(1.2)
P 		100.7
(1.9)
P 		55.7
(-3)
A 		91.4
(0.9)
P 		82
(-0.1)
P 		55
C 149.8
(3)
P 		63.4
(-3)
P 		90.3
(-1.1)
M 		147.2
(2.8)
P 		76.8
(-2.1)
P 		109.2
(0.2)
P 		86
avr 132.6
(3) 		84.6
(-2.3) 		96.1
(-1) 		96.1
(-1) 		78.5
(-3) 		93.7
(-1.3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 52.4
(3)
P 		18.2
(-2.6)
P 		15.7
(-3)
A 		24.4
(-1.6)
P 		37
B 55.4
(3)
P 		21.2
(-2.4)
A 		17.7
(-3)
A 		18.6
(-2.9)
A 		38
C 53.2
(3)
P 		28.6
(-2.1)
P 		31.7
(-1.4)
P 		24
(-3)
P 		29
avr 53.7
(3) 		22.7
(-2.8) 		21.7
(-3) 		22.3
(-2.9) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 25.4
(-0.8)
P 		34.5
(3)
P 		21.2
(-2.6)
P 		21.7
(-2.4)
P 		20.3
(-3)
P 		21.9
(-2.3)
A 		14
B 38.4
(3)
P 		31.1
(1.2)
P 		24.5
(-0.5)
P 		14.7
(-3)
A 		37.1
(2.7)
P 		30.6
(1)
P 		24
C 55.5
(3)
P 		19.3
(-3)
P 		23
(-2.4)
M 		29.6
(-1.3)
P 		24.8
(-2.1)
P 		36.6
(-0.1)
P 		36
avr 39.8
(3) 		28.3
(-0.9) 		22.9
(-2.7) 		22
(-3) 		27.4
(-1.2) 		29.7
(-0.4) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17683
Sequence Type Exemplar sequence
Representative Public ID T23C6.4 NCBI
Target Description T23C6.4 /REP_DB=WormBase Gene ID /WP=CE07529 /TR=O02041 /GB=AAB52885.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078376 NCBI Caenorhabditis elegans T23C6.4 (T23C6.4) mRNA, complete cds. 11/11 None
SNAP00000033354 ENSEMBL cdna:SNAP chromosome:CEL140:X:17147692:17149829:-1 11/11 None
GENEFINDER00000033358 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17147692:17149829:-1 11/11 None
T23C6.4 ENSEMBL cdna:known chromosome:CEL140:X:17147498:17149829:-1 gene:T23C6.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17148538-17149829(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23C6.4
Entrez Gene 181754 Entrez gene
SwissProt O02040 EMBL-EBI
WormBase CE07529 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52883 Hypothetical protein T23C6.4 [Caenorhabditis elegans] ref|NP_510777.1| T23C6.4 [Caenorhabditis elegans] 1.0E-154
blast CAE69699 Hypothetical protein CBG15956 [Caenorhabditis briggsae] 4.0E-36
Sequence
Target Sequence 
>C. ELEGANS:182132_AT
gtcgctgagcagtcaacagcctgcagaaaaccaaccattcgacttcaaatcatcacaact
ttactggaactccacagctgcactcatggagtctcaattcaaaaacatgaaaaacgagga
ttttgtgtacccagcaaagaaaaaagtaggaatggacgatggagctattattcgtggcga
ggaacatctccgaagacaacaggaaagtgcaaaatacaacaatctactcactcgagaccc
gtacctggactatattttatctacaatgaccgatgaagatttcacctacgaaaccaagaa
acccgtggatccaaactatggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCTGAGCAGTCAACAGCCTGCA 523 473 15 Antisense
AACAGCCTGCAGAAAACCAACCATT 410 135 29 Antisense
ACCAACCATTCGACTTCAAATCATC 213 85 44 Antisense
CTTTACTGGAACTCCACAGCTGCAC 420 223 73 Antisense
ACAGCTGCACTCATGGAGTCTCAAT 188 109 88 Antisense
AAACGAGGATTTTGTGTACCCAGCA 171 125 126 Antisense
GATGGAGCTATTATTCGTGGCGAGG 178 407 172 Antisense
GTGGCGAGGAACATCTCCGAAGACA 635 489 188 Antisense
ACAACAATCTACTCACTCGAGACCC 104 111 230 Antisense
GAGACCCGTACCTGGACTATATTTT 543 383 248 Antisense
GAAACCCGTGGATCCAAACTATGGT 522 125 312 Antisense
Sequence Source Affymetrix Proprietary Database