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[182131_s_at]

Description F29D11.2 /REP_DB=WormBase Gene ID /WP=CE09790 /TR=Q93598 /GB=CAA98126.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 46      6grp_total > 47      4grp_total > 54      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 549
1 2 3 4 range
A 657.8
(3)
P 		485.5
(0.8)
A 		362
(-0.9)
M 		197.2
(-3)
A 		461
B 746
(3)
P 		471.3
(-0.8)
A 		311.8
(-3)
A 		340.3
(-2.6)
P 		434
C 566.1
(3)
P 		415.9
(-1.4)
A 		479
(0.5)
P 		359.7
(-3)
A 		206
avr 656.6
(3) 		457.6
(-0.3) 		384.3
(-1.6) 		299.1
(-3) 		358

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 609.3
(2)
M 		634.5
(2.6)
P 		412.7
(-3)
P 		512.8
(-0.5)
P 		441.9
(-2.3)
P 		650.8
(3)
P 		238
B 681
(3)
P 		478
(-1.1)
P 		508.8
(-0.5)
P 		452
(-1.7)
P 		387.1
(-3)
P 		552.5
(0.4)
P 		294
C 531.9
(-0.8)
P 		619.4
(1.5)
P 		548.3
(-0.4)
P 		523
(-1)
M 		444.8
(-3)
P 		679.2
(3)
P 		234
avr 607.4
(2.4) 		577.3
(1.5) 		489.9
(-1.1) 		495.9
(-0.9) 		424.6
(-3) 		627.5
(3) 		203
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 239.5
(3)
P 		105.4
(-0.8)
A 		94.6
(-1.1)
M 		28.9
(-3)
A 		211
B 237.9
(3)
P 		116.4
(-1.4)
A 		72.3
(-3)
A 		72.5
(-3)
P 		166
C 187.4
(3)
P 		119.6
(-0.2)
A 		166.9
(2)
P 		60.7
(-3)
A 		127
avr 221.6
(3) 		113.8
(-0.9) 		111.3
(-0.9) 		54
(-3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 112.3
(-2)
M 		225.7
(3)
P 		89.9
(-3)
P 		130.1
(-1.2)
P 		133.3
(-1.1)
P 		158.5
(0)
P 		136
B 236.9
(3)
P 		159.1
(-1)
P 		123.6
(-2.8)
P 		119.7
(-3)
P 		157.3
(-1.1)
P 		206
(1.4)
P 		117
C 197.2
(1.5)
P 		189
(1.1)
P 		139.6
(-1.3)
P 		105.2
(-3)
M 		143.9
(-1.1)
P 		227.4
(3)
P 		122
avr 182.1
(1.9) 		191.3
(2.5) 		117.7
(-3) 		118.3
(-3) 		144.8
(-1) 		197.3
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182131_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1488
Sequence Type Exemplar sequence
Representative Public ID F29D11.2 NCBI
Target Description F29D11.2 /REP_DB=WormBase Gene ID /WP=CE09790 /TR=Q93598 /GB=CAA98126.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059727(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059727 NCBI Caenorhabditis elegans F29D11.2 (F29D11.2) mRNA, complete cds. 11/11 None
F29D11.2 ENSEMBL cdna:known chromosome:CEL140:I:7642632:7647907:-1 gene:F29D11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7642895-7647821(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29D11.2
Entrez Gene 172521 Entrez gene
SwissProt Q93598 EMBL-EBI
WormBase CE09790 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01707 Hypothetical protein F29D11.2 [Caenorhabditis elegans] emb|CAA98126.1| Hypothetical protein F29D11.2 [Caenorhabditis elegans] ref|NP_492128.1| F29D11.2 [Caenorhabditis elegans] 0.0
blast CAE66552 Hypothetical protein CBG11864 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182131_S_AT
aaccaacacacgtcgaccttgtggatgacatatttcacgaaatggctggagctcctgatt
caacatctgtcgattattatatttgtgctcttaacttcgtggaatatcagagtctcagta
gatcagctctcacaaaaattcatggagatttagaatcgtatatatttctccacgaattag
acggtgacaagcatcgatacaacgaacttcgaaaggctcatagaaagatagcgaaaattc
tcggattgaacgaagatgaaattgaagaagtgccaagcaaaactgacttaagaaaagaag
cagcgccgtccaaaaccaacaaaagaaatgcgaacttgatcagcacggatatcgcagttg
ataatgatgtgaatatggaagaagatgataagcctggcccatcaagacccgctactgtta
gaaaaccgagagctccacgagcaactccagcgtctgccacgaaaaagaaacctttagttg
aagaggatgcgttggagattttgaaaagtccacccagaaatactaaaaaaccaccatccc
gtccaactacagctacccgtccaactgcagttgcagctcgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAACACACGTCGACCTTGTGGA 220 147 2849 Antisense
TGGAGCTCCTGATTCAACATCTGTC 645 547 2895 Antisense
ATATTTGTGCTCTTAACTTCGTGGA 577 19 2927 Antisense
GAGTCTCAGTAGATCAGCTCTCACA 239 399 2958 Antisense
GACGGTGACAAGCATCGATACAACG 375 377 3028 Antisense
GAAAAGAAGCAGCGCCGTCCAAAAC 424 351 3140 Antisense
TGATCAGCACGGATATCGCAGTTGA 543 565 3185 Antisense
GATGATAAGCCTGGCCCATCAAGAC 378 411 3232 Antisense
CCATCAAGACCCGCTACTGTTAGAA 658 269 3247 Antisense
AGAAAACCGAGAGCTCCACGAGCAA 375 71 3268 Antisense
GTCCAACTGCAGTTGCAGCTCGCAC 159 477 3407 Antisense
Sequence Source Affymetrix Proprietary Database